Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0486 ATGCATGCTGCAACTTTAATTGTTGTTAGTTCTGTGCCTTCTCATTCAAGTTCCATTGAGTGTGTTGGGTTCGCACCAAGTGGTACCTGGGCTTTAATCGGAGGCATGGATAAAATGACCATCTGGGATATAGAATATTCCTTAGCCCGAAGCACTTGTGAGCACGAGTATGGAGTAACATGTTTGACATGGCTTGGTGCATCCTATGTGGCTACCGGATCTATGGATGGAGCTGTGAGATTATGGGATAGTCGGTCTGGTGAATGTGTCAAAGTGTTCAGAGGACACTCTGAAGGCATTCAAACTCTTTCTTTGTCTGCCAATCGCGAGTACCTTGTCTCGGCTTCTTTAGATCATACAGCTCGTGTTTTTGAGGGTCCCTCCATTTTCAGAAAGGTAACGTTTTGGGGTGTTTTGTTGAAGTTAACAGGGTGTTCAGCTCGTGGAGTGACTCCAATACTGCACTGTAATTGCTTTCGAGCTCCTTTACCGCAAGGAGCTAAAGTGAAATGCCTCTCAAATGCTGGTTACTATATCAACGCGTAA 546 0.4487 MHAATLIVVSSVPSHSSSIECVGFAPSGTWALIGGMDKMTIWDIEYSLARSTCEHEYGVTCLTWLGASYVATGSMDGAVRLWDSRSGECVKVFRGHSEGIQTLSLSANREYLVSASLDHTARVFEGPSIFRKVTFWGVLLKLTGCSARGVTPILHCNCFRAPLPQGAKVKCLSNAGYYINA* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0486 181 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 92 IPR001680 GO:0005515
Psa6g0486 181 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 8 125 - -
Psa6g0486 181 Pfam WD domain, G-beta repeat 54 83 IPR001680 GO:0005515
Psa6g0486 181 Pfam WD domain, G-beta repeat 11 38 IPR001680 GO:0005515
Psa6g0486 181 Pfam WD domain, G-beta repeat 87 124 IPR001680 GO:0005515
Psa6g0486 181 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 8 125 - -
Psa6g0486 181 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 52 88 - -
Psa6g0486 181 SMART WD40_4 45 83 IPR001680 GO:0005515
Psa6g0486 181 SMART WD40_4 86 125 IPR001680 GO:0005515
Psa6g0486 181 SMART WD40_4 5 43 IPR001680 GO:0005515
Psa6g0486 181 SUPERFAMILY WD40 repeat-like 8 137 IPR036322 GO:0005515
Psa6g0486 181 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 93 125 - -
Psa6g0486 181 ProSiteProfiles Trp-Asp (WD) repeats profile. 93 125 IPR001680 GO:0005515
Psa6g0486 181 Gene3D - 3 134 IPR015943 GO:0005515
Psa6g0486 181 Pfam Pectinacetylesterase 142 181 IPR004963 GO:0016787
Psa6g0486 181 ProSitePatterns Trp-Asp (WD) repeats signature. 70 84 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0486 Psa-Chr6 16029111 16033400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0486 142 180 Carbohydrate Esterase AT4G19420 58.974 3.01e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0486 K24725 - cam:101499158 207.223