Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0485 ATGGATTTGAATACAAACATGATTGATCATTGTTGGAGGCAAAATCCCGAATGGAGGAGGCATAGGCAACAAATAGCAACGTGCTCTATAGGCTATGTTGGAAAAATGACAAACAACATTGGTAAAGAACTCATACATTATAAAGTTACTGATCCAAATGATGATCCTATAAATCCTAAATTTGGAACATTGAGATACGGAGCCTCTGTAATTCAAGGTAAAGTATGGATCACATTTCAAAAGGACATGAACATTAGACTTGTGAAACCCCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGTGTCAATATCCATATTGCTAACAATGCATGTTTGATGATATTCAAGGCCACCAATATAATCATTCATAGCATTCGAATCCATCACTGCAAAGCTCAATCTCCAGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCATTTGGGTCCCGTTGATGGAGATGCAATAAGATTGATTACCGCTTCAAAAATTTGGATTGATCATAATACACTTTATAATTGTGAAGATGGTCTTCTTGATGTCACTAGAGGTTCTAGTAACGTGACTATATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGTCATGATGATGGGTACGTGAGAGACAGAAACATGAAGGTTACTGTTGTGTACAACCATTTTGGACCTAACTGCAATCAACGAATGCCTAGGATTCGTCATGGATATGCACATGTAGCCAACAATCTTTATTTAGGATGGGTGCAATATGCTATTGGTGGAAGTATGGGACCTAGTCTAAAAAGTGAGGCTAACCTCTTCATAGCACCAAAAGTTGGGAGTAAGGAGGTGACATGGAGAAACGTTGGTAAAACAAATGGGAACCAATGGGAATTTCATTCAGTAAGAGATGGATTTGAAAATGGAGCCTCATTTGCAGTAACAGAAGGTGGGCGTGTGCCAAAGCCGAATTATAGCAAAGAACAAAGTTTTAAAGTTGTTAATGTTAAATATGTTAGATCGTTGACAAGATCATCTGGTGCATTTCAATGTAGTAAAACCTTTATATGTTGA 1071 0.3782 MDLNTNMIDHCWRQNPEWRRHRQQIATCSIGYVGKMTNNIGKELIHYKVTDPNDDPINPKFGTLRYGASVIQGKVWITFQKDMNIRLVKPLLISSFTTIDGRGVNIHIANNACLMIFKATNIIIHSIRIHHCKAQSPGMVMGPNGKVIHLGPVDGDAIRLITASKIWIDHNTLYNCEDGLLDVTRGSSNVTISNNWFREQDKVMLLGHDDGYVRDRNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRNVGKTNGNQWEFHSVRDGFENGASFAVTEGGRVPKPNYSKEQSFKVVNVKYVRSLTRSSGAFQCSKTFIC* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0485 356 PRINTS Pollen allergen Amb family signature 53 78 IPR018082 -
Psa6g0485 356 PRINTS Pollen allergen Amb family signature 90 106 IPR018082 -
Psa6g0485 356 PRINTS Pollen allergen Amb family signature 154 175 IPR018082 -
Psa6g0485 356 PRINTS Pollen allergen Amb family signature 234 253 IPR018082 -
Psa6g0485 356 PRINTS Pollen allergen Amb family signature 256 275 IPR018082 -
Psa6g0485 356 PRINTS Pollen allergen Amb family signature 296 320 IPR018082 -
Psa6g0485 356 PRINTS Pollen allergen Amb family signature 327 350 IPR018082 -
Psa6g0485 356 SUPERFAMILY Pectin lyase-like 4 347 IPR011050 -
Psa6g0485 356 Gene3D - 5 349 IPR012334 -
Psa6g0485 356 PANTHER PECTATE LYASE 4 353 - -
Psa6g0485 356 PANTHER PECTATE LYASE 18-RELATED 4 353 IPR045032 GO:0030570
Psa6g0485 356 SMART amb_all 82 279 IPR002022 -
Psa6g0485 356 Pfam Pectate lyase 93 273 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0485 Psa-Chr6 16019974 16021526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0485 36 283 Polysaccharide Lyase AT5G09280 70.968 3.21e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0485 K01728 - gmx:100780437 636.721