Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0472 ATGCCCAAAATGAAGCATCTACTCAGAAAGCTTCACATCGGTGGTGGCGCTGCTACGATCAATAATCATAATCCAAACGCAACATTGCAACTTCCTCATTCTGATTCTCATACTACTACGACTCCTCTTCCTTCTTCATCTTCTGCTTCTCTCTCTCCCACTCCTTCTCCTTCACCGTCTCCCTCTCCGACCGTTATTCAGAACCCTCCAAACGACGTCGTCGACCGAGGTGTTGTGGATTTCAATCTTTTGCAGGAAGAAGAGTTTCAGGTTCAATTGGCTCTTGCAATCAGTGCTTCTGATTCCGATCCTCATGATGTTGATGAATCTGCGCAGATCGATGCTGCTAAACAGATCAGCCTTGGATATTCTGCTTCTCTTACTGATACTCCCGCGCTTGTTCAGTTTCAATCGCTGCGTTATTGGAATTACAATGTCATTGCTTATGACGAGAAAGTGATGGATGGGTTTTATGATGTCTATGGGATAGACTCAAGTTTAATTGAACGGGGAAAGATGCCTTTGCTGGTGGATCTGAAAACTGTGCCCACCTCACGAAATGTGGATTATGAAGTAATCTCAGTGAACCGCATTGTTGATGTTGAGCTAAGTCAGCTTGAGAAAAAAGCCTGCACCTTGTTTGAAGAGTGTTCTGTTTCTGAACTAGGATTGTTTTTGAGTGGCTTAATTCAGAAACTTGCTGATGTTGTTGTTAGTAGAATGGGTGGACCGGTTAGTAATGCTGATAAAATTATGGAAAAGTGGACTATGAAGAGTCGTGAATTGCGAGATTCTTTAAGAACCGTAGTCCTTCCTCTGGGCCGTCTAGATGTTGGACTTTCACGTCACCGTGCCCTACTTTTTAAGGTACTTGCTGATAGGATTAATATTCCCTGCATGCTTGTAAAAGGGAGCTATTACACAGGAACTGATGATGGGGCTGTGAACTTGATTAAAGCTGATGATGGAAGTGAATACATTATTGATATGATGGGTGCTCCTGGTACTCTTATACCTGCTGAGGTGCCCAGCAGTCAGATCCAAAACTATGGTTTTGCCGGTAGGGATTTCACAGAGATTGCAGAACAGCCTAACAACATATACCAAATGCTTGGTGATCAAACTGGTGTGCTGGGAGTATTGTCTGATTGTAATGTAGGGAGTTTCCAGACAAAAGAATTAGTAGAAATCGGCAGTCAAACAAAACCAGATGAAATGAATCATGTTAAGGTAAATGAAGCAGGGAGATTTGAGCATACAGAAGCATATGAATGCTCATCACAATCAGAGTCATCGCATGCTGAAAACATGCATGTAAAAAATGTCTCCAAGTATGTTCTCAGTGCCGCAAAAAACCCAGAGTTTGCCTCTAAACTGCACACCATTCTTTTAGAAAGTGGTGCATCACCTCCTTCTGATCTTTTTTCAAATATGAATTCCCGAGATAGGGGTTTAGATACTGTTCAAGCTGATTCAAATAGGCTGTTATTATTAAGTTATGATAAGTCTCTCATACTCCCTCAAGGAGTGGGCTCTTCTAGTAATACTAGGTTATGTCAATCAGCTGACCAATTAGCCGAACAGCATAAGGAATTCCGCACAGATGCCAATGAATTTTATGATTCTTCTCAGATTAGTAGTACAAGGAATCCTTTTGCAACTGTTTCCGGTAAAGATGGTGATATACAACAATCTAATCCATTAATTGTTGACTTTGCTTCTCTTAATACATGTAACACGTGTAAAGAAAAGTGTCCCGAGTCTTCCTTGTCCAAGGCAGTCTTTTCTTGCAAAAGGCACAATGGTGTTGAATGTTTTTGTGATAATGATGAAACTGGTCCTAGAAATGAGGCTGGAGCTTCTTTGAATAACATTGAACTTGGGACTGATTCAGTCATTCAAATAAACGAGACAGTTGATGGAGATTGTATACTACATGATGATGGTAAAAGCAAGAAAGTTCACCCAATACTTGGTGAAGACACACAATGGGAAATTCAATGGGAGGATCTTCGTATCGGTGAGCGTATTGGTATTGGTTCTTATGGTGAAGTTTACCGCGCTGATTGCAATGGCACTGAAGTTGCTGTAAAGAAGTTTCTAGACCAAGATGTCTCTGGTGATGCATTAGATCAGTTCAAATCGGAAATTGAGATTATGCTAAGGCTGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGTCCACCACATTTCTCTATCTTGACTGAGTTTCTTCCTAGAGGCAGTTTATACGGACTATTGCATCGTCCCAAACTTGTACTTGATGAGAAGAGACGGTTGCGTATGGCTCTTGACGTGGCTAAGGGAATGAATTACTTGCACACCAGCCATCCTCCCGTTGTTCATCGAGATTTGAAGTCTCCAAACCTTCTTGTTGACAGGCATTGGGTTGTAAAGGTCTGTGATTTTGGTCTGTCACGTATGAAGCACAATACATATTTGTCATCGAAGTCGTGTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTCTTACGGAATGAGCCTGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTAACTACAACGAAAATCCCATGGCACGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGTCTTGAAATTCCAGAAGAAATGGATCCAGTGGTAGCTCAAATAATACGTGACTGCTGGCAAAGGGAGCCACACTTGCGACCATCCTTCTCACAACTGATGTCTCGTCTTTACCGTCTTCGCCAATTGGTTGCCCGTAAGACGAGTTCTACTCAATAA 2817 0.4217 MPKMKHLLRKLHIGGGAATINNHNPNATLQLPHSDSHTTTTPLPSSSSASLSPTPSPSPSPSPTVIQNPPNDVVDRGVVDFNLLQEEEFQVQLALAISASDSDPHDVDESAQIDAAKQISLGYSASLTDTPALVQFQSLRYWNYNVIAYDEKVMDGFYDVYGIDSSLIERGKMPLLVDLKTVPTSRNVDYEVISVNRIVDVELSQLEKKACTLFEECSVSELGLFLSGLIQKLADVVVSRMGGPVSNADKIMEKWTMKSRELRDSLRTVVLPLGRLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGTLIPAEVPSSQIQNYGFAGRDFTEIAEQPNNIYQMLGDQTGVLGVLSDCNVGSFQTKELVEIGSQTKPDEMNHVKVNEAGRFEHTEAYECSSQSESSHAENMHVKNVSKYVLSAAKNPEFASKLHTILLESGASPPSDLFSNMNSRDRGLDTVQADSNRLLLLSYDKSLILPQGVGSSSNTRLCQSADQLAEQHKEFRTDANEFYDSSQISSTRNPFATVSGKDGDIQQSNPLIVDFASLNTCNTCKEKCPESSLSKAVFSCKRHNGVECFCDNDETGPRNEAGASLNNIELGTDSVIQINETVDGDCILHDDGKSKKVHPILGEDTQWEIQWEDLRIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDVSGDALDQFKSEIEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYGLLHRPKLVLDEKRRLRMALDVAKGMNYLHTSHPPVVHRDLKSPNLLVDRHWVVKVCDFGLSRMKHNTYLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTKIPWHGLNPMQVVGAVGFQNKRLEIPEEMDPVVAQIIRDCWQREPHLRPSFSQLMSRLYRLRQLVARKTSSTQ* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0472 938 CDD STKc_MAP3K-like 677 923 - -
Psa6g0472 938 MobiDBLite consensus disorder prediction 33 69 - -
Psa6g0472 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Psa6g0472 938 SUPERFAMILY Protein kinase-like (PK-like) 661 924 IPR011009 -
Psa6g0472 938 PANTHER SERINE-THREONINE PROTEIN KINASE 74 935 - -
Psa6g0472 938 Pfam Protein tyrosine and serine/threonine kinase 671 923 IPR001245 GO:0004672|GO:0006468
Psa6g0472 938 SMART serkin_6 671 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0472 938 ProSiteProfiles Protein kinase domain profile. 671 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0472 938 MobiDBLite consensus disorder prediction 33 53 - -
Psa6g0472 938 PRINTS Tyrosine kinase catalytic domain signature 745 758 IPR001245 GO:0004672|GO:0006468
Psa6g0472 938 PRINTS Tyrosine kinase catalytic domain signature 784 802 IPR001245 GO:0004672|GO:0006468
Psa6g0472 938 PRINTS Tyrosine kinase catalytic domain signature 831 841 IPR001245 GO:0004672|GO:0006468
Psa6g0472 938 PRINTS Tyrosine kinase catalytic domain signature 850 872 IPR001245 GO:0004672|GO:0006468
Psa6g0472 938 PRINTS Tyrosine kinase catalytic domain signature 894 916 IPR001245 GO:0004672|GO:0006468
Psa6g0472 938 Pfam Ethylene-responsive protein kinase Le-CTR1 135 338 - -
Psa6g0472 938 Gene3D Transferase(Phosphotransferase) domain 1 750 935 - -
Psa6g0472 938 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 74 935 - -
Psa6g0472 938 Gene3D Phosphorylase Kinase; domain 1 664 748 - -
Psa6g0472 938 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0472 Psa-Chr6 15659189 15668400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0472 1 929 MAP Kinase Kinase Kinase AT5G11850 53.671 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Psa6g0472 PK_Tyr_Ser-Thr 2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0472 K04424 - gmx:100779137 1334.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0472 6 15659189 15668400 Psa6g0472 6 15659189 15668400 ECH