Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0464 ATGACTCCTGTAACCCCAAATCCACCAGGTCCTAAGTCCTTTCAACAAGGTCAAAACCAGTCCTTCAGTGTTTCTCCTGTTAATCAGGACCCTCCTGCCTTGTTTAATTTACTTGGACAGTTTCAAGAAAATCATGATCCTAAGGATCATAAGCTGGTACATCATTATGGCGGATCATCATCATCGACCAATCATCGACAACTCTATAATTCATCTAATTCATCGAGTAACTCAGCTATGGTTGATCAAAGGAGTGCGCGTGACACAAATTTATCATCATCCATGGAGGTGGAAGATAGCGGCAAAAGAAATGGCGACGGATTGGGGAAATGGACGTCTTCGAAGATGAGGTTGATGAAAAAATTGATGATCCCAGAAAGAAGTTATGATGCAGCCACAAATGAAGAGAAAGCAATTATCAACACAAGTGCTAGTGCTGCCACAACTCCATCAAATAGAGGATTTCAAAATGAAAGGTACAATCAAGGAAGCCCTACTGCTAGGGCTTGTGTTGAGTGTCAAACTACCTCTACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCACTCTGCAATGCTTGTGGAATTAGACAGAGGAAGGCAATAAGGGCTGAGGAAGAAGCTGGAAATAGTTTGTTCACTTCCACAAAGACCAGAGGACTTAACAAAGAAAAAGAAAAGAAACTTCTTGTGAACAAATGTACACAATTCAAGAAGAAGAACAAGACTATTGCAACTACTGCGGCTAGTACTACAGGAAGTAGTTCATCCGAAGATCCGGAGAGACTTGAATATTTTTTATTAAAGGTGAGGGAAAAATCAGGTTACGAGTATACTAGTGAGGAAGTAGTTGATTATGCACTACTTCTAATGGATATATCTTGTGGTTATATTTACCCTTAA 906 0.4073 MTPVTPNPPGPKSFQQGQNQSFSVSPVNQDPPALFNLLGQFQENHDPKDHKLVHHYGGSSSSTNHRQLYNSSNSSSNSAMVDQRSARDTNLSSSMEVEDSGKRNGDGLGKWTSSKMRLMKKLMIPERSYDAATNEEKAIINTSASAATTPSNRGFQNERYNQGSPTARACVECQTTSTPLWRSGPMGPKSLCNACGIRQRKAIRAEEEAGNSLFTSTKTRGLNKEKEKKLLVNKCTQFKKKNKTIATTAASTTGSSSSEDPERLEYFLLKVREKSGYEYTSEEVVDYALLLMDISCGYIYP* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0464 301 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 11 299 - -
Psa6g0464 301 SMART GATA_3 164 229 IPR000679 GO:0006355|GO:0043565
Psa6g0464 301 MobiDBLite consensus disorder prediction 56 98 - -
Psa6g0464 301 CDD ZnF_GATA 169 201 IPR000679 GO:0006355|GO:0043565
Psa6g0464 301 MobiDBLite consensus disorder prediction 11 30 - -
Psa6g0464 301 ProSitePatterns GATA-type zinc finger domain. 170 195 IPR000679 GO:0006355|GO:0043565
Psa6g0464 301 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 11 299 - -
Psa6g0464 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 203 - -
Psa6g0464 301 Pfam GATA zinc finger 170 201 IPR000679 GO:0006355|GO:0043565
Psa6g0464 301 Gene3D - 164 209 IPR013088 GO:0006355|GO:0008270
Psa6g0464 301 MobiDBLite consensus disorder prediction 1 109 - -
Psa6g0464 301 ProSiteProfiles GATA-type zinc finger domain profile. 164 200 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0464 Psa-Chr6 15435630 15438065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0464 110 199 C2C2-Gata Transcription Factor Family AT4G26150 50.000 2.19e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa6g0464 GATA 9.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0464 - - mtr:MTR_1g016170 262.692