Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0454 ATGGAGAATGATGTGTACAATGCTCAAATGAACATGTCTGGTCAAATTTCATCTGTCATAGAAGATATCACACATCATCTAACACAAAAGCCACTCATTCATCATTGCTATTCATTTGATCTTAACAACCAAAACATTATTAATGGAATTCCAATACTTTCCGGAGAACAAAATCAAGAACAACAACATGTAAGTAATAATAACCATGTTGATGTTGGTAGCACTAGCGGCTTCATGAATCATCAAACCATTGCTGATTCTACTTCATTTGTTTCATCACAACAAGGAAGGACTATTGTGGTGAATCCCCCGAATCCCTCAAATCTCGTTGTTAACAATGAATTTCAAGATAATTTAGAAGCTATGGTTCCTTACATGTTCAATAATTGGCATGATACTTCAAGTTCAAACCCTTTATGTGCAACTTTTGGTCATAATAATAATAGCTATGTTAACAAGTTTATGAAAGCTCATGAGGGTAATGATGGAACTGAATTCATGTCGTATTCGACGATAGCGAACATTGATCCGAATGGATGGCAATCATCAAATCTTGCTTATAGTTCATCTAATTGTAGCAATGAGCTTTCGCTAAGTCTTGCAACATCTCCGAATTCAGGTCAGTGTTCGGAGATTAGTTGCTCTGACTTGACTCATAGCATGAATGGAACAAGATCAGGCTTGGAACAAGCTTCTTGTAGTAGTATGGAACTTTCTATGAGTTTAGGTAACGATAAACATGTTAAATTCTCGCCGGCGTTATTAGGATCGAGATACCTTGCTGTCATTCAGGAGATACTTGTTCAGATTGCTACTTTTTCTTTTGAAAATCTAGATGAGATAAGTTACTCAGGTTCTGGTGTTAGAGGGCAAGGAAATAAATCAAGTTCGACGAACACAACCAAGAGGAGGATAGGACTAAACTGCGATGCGAATTCTAAGTCGGAAGCGTATGCTGATTCTTCGTTGCAAAGGCAAGCTGCTGAATCAAAGAAATCACAACTTCTAATGCTTCTACAGCTGGTGGATAATCAATACAGTCAATGTTTGGATGAGGTTCACACTGTTGTATCTGCATTTCATGCTGCTACTGAGCTGGATCCACATATACATGCACATTTTGCTGTCAAAACGGTTTCTCGACTCTACAAGGATTTGAGAGAGAGGATAAGCAATCAAATTCTTGCCATGGGATCGAATTTCAATAGCTCGCGTTCGGAAGAGGATAAGGAATTGTCTTTAGAAACTTCATTCATTCAGAAGCAATGGGCTCTACAACAGCTGAAAAGGAAGGATCAGTTATGGAGACCTCAAAGAGGCTTGCCAGAAAGATCTGTTTCCGTCCTACGCGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCGGAGAAGCATTTACTTGCGATAAAAAGTGGATTGACGAGAAGTCAGGTATCTAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCTTTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTAGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATAAACAATCAAATGTTTAATATCAATTGA 1605 0.3819 MENDVYNAQMNMSGQISSVIEDITHHLTQKPLIHHCYSFDLNNQNIINGIPILSGEQNQEQQHVSNNNHVDVGSTSGFMNHQTIADSTSFVSSQQGRTIVVNPPNPSNLVVNNEFQDNLEAMVPYMFNNWHDTSSSNPLCATFGHNNNSYVNKFMKAHEGNDGTEFMSYSTIANIDPNGWQSSNLAYSSSNCSNELSLSLATSPNSGQCSEISCSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPALLGSRYLAVIQEILVQIATFSFENLDEISYSGSGVRGQGNKSSSTNTTKRRIGLNCDANSKSEAYADSSLQRQAAESKKSQLLMLLQLVDNQYSQCLDEVHTVVSAFHAATELDPHIHAHFAVKTVSRLYKDLRERISNQILAMGSNFNSSRSEEDKELSLETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQMFNIN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0454 534 Pfam Homeobox KN domain 452 491 IPR008422 GO:0003677|GO:0006355
Psa6g0454 534 PANTHER HOMEOBOX PROTEIN ATH1 18 531 - -
Psa6g0454 534 SMART HOX_1 435 499 IPR001356 GO:0003677
Psa6g0454 534 MobiDBLite consensus disorder prediction 286 306 - -
Psa6g0454 534 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 531 - -
Psa6g0454 534 SMART prehox3 248 392 IPR006563 -
Psa6g0454 534 CDD homeodomain 435 495 IPR001356 GO:0003677
Psa6g0454 534 Gene3D - 428 510 - -
Psa6g0454 534 Pfam Associated with HOX 254 391 IPR006563 -
Psa6g0454 534 ProSiteProfiles 'Homeobox' domain profile. 432 495 IPR001356 GO:0003677
Psa6g0454 534 SUPERFAMILY Homeodomain-like 437 504 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0454 Psa-Chr6 15064565 15068049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0454 194 508 Homeobox Transcription Factor Family AT4G32980 57.547 2.94e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Psa6g0454 POX 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0454 - - gmx:100812648 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0454 6 15064565 15068049 Psa6g0454 6 15064565 15068049 ECH