Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0446 ATGCCAGTGGAGCCATTTGAATCAAACAAATCATGTTATGTTTGCTCTAAGAGTCCTGTATTGCTTGAAATAAACACAAACCGCTCAAAGTTGAAGGACGTTGTTGAAAAGATCATCAAGGCTAAGCTTGGGATGAACCTTCCACTTATTATGAATGCTTCAAACCTTCTCTATAAGGCTGGTGATATTGAGGACGACATGGTTGCAATTTATGATGCCAATCTTGAAAAGGTCCTAGTTGAGCTTCCTTCTCCTGTAACTGGTGTATGTGGAAAACGAGACATACCAGAGGGTCATTGTTCATCTTCAGTATCTGTGCATACTGAAGGAGGCACATGGGATTCTGAGACTTCTCCGGTAGCAGCAGAATGTTTAATAGTTTTATTTGTCACCTTCTTTGATATGGTGAGGTCTCAGCTACCGGGTGTTGTGTCCGTACTGACAGGGTTCATTAGAAGTCATGTTCAGGGTCCAACTAGTACTAGAGTTGCTGGACTAGTTTTGAGAACCATGAGTAATGTTGAAGTACTTAAATTTTCACACTCTCCTGACCATGATTTGATAAATGACGAGTATGATGACGACAATCTGCAAACGGCCACATATGTTGTCCCAAGAACAAAGAATCATATTGCTATACAGCTACTTATTTTTCAGGGGTTTGCATTCTGTCCTATAAGTTGGAACAATTGGGTTTTTCATAGGTATGAAGTGAGAGACGGGAATGGAGCTGGAGTGAGGTGCTTAGTAGAGATGCATACCACAAAGAAGAGGCAAGCTTATCATACTATATATCCTACCCCAAATCTGCTAATGAGGGCCCCTAAATGGCTCAACTGTCATGATGTTTGGGGGGTGTGGTTGAAAGTTTTGGTTCTATTATGGAAGGTTTGGACAGTTAGAGTTACAATGTATTATTTTGCTCGGTTTTTTTGGATGCCTTGCCTTTACGGTTCAGCTGATGTTGGAGGATTAACGACATGTATGAGTTACGAGCCTCTCCGGTGGCTAATTTTTACAAATCATTTTGCTCAAGCTTATCTTTTCTGGAGACCTGATTCTGGATCTACTATGAGAAGCTTACTTGATGTAGCTTCAAGACTACTAGACCCAAATTTGGAAAGCTTTGGGTCTCTTTTTGTTGGGAGTTATATTCTTCAACTCATATTGCATTTACCATCACAAATGGCTGTACATATACGTGACCTGGTTGCTGCTCTTGTCAGACGTATGCAATCTGCTCAAATTGCTTCCCTGAGAAGCTCCTTGCTAGTTGTTTTTGCCAGATTGGTTCACGTGAGTGTTCCTAATGTTGGACAATTTATTGATCTGCTAATTTCAGTTCCAGCCGAGGGACATAATAACTCCTTTGCTTATGTGATGTCAAAATGGGCTAAGCAACAAGAAGGGAACACAATTGATGGTTTTCATGTTTCTGACTTCGGAGCATTTGGTCAGCCGTATCGCCTAGAGGATGTCGTTGCTCTGAGTGGAAATTCAAACTCGGTTTTTAACTCACTAAAAGTAAGTGGCAAAACAATTTCTCCTGGCCCTGTTCACTTCAGTACTCTTGGAAAGTTTCCAACTTCACTTGATAAAAGCCCCTTGGAGAATCAAACGGAGCCACCTAGGTTGCAATTAACAAAGCTTCAATCATCAAATCCTAGCAGCAGTACGATATTAAGTGTTCATATAGAAAACCAGGAAGAGTTTGCCATGGCCGATGCCAGTCATAGGACTGATATTTCTACTGATGTTGACACCGATGACAAGAATCAACGGTTTGATACAAATCAATCCCTTGCTGTTGTGGGTTCCGACTCCAGTGACAGATCAAAGGATAAGTCAGATCAAAAGACTCTCTGCAGGCTCACTCAAAATCGTGAGGCAGCAAGAAAAAACCGATTGAGAAAGAAAGCCTATGTCCAACAGTTGGAAAAATATGCAAGGTGGCTAGAAGAACATAATCGACAAATCAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAGACTAAAAGGTGTTGCAGCTAAGGTTGATGTTTTCCATTTGTTGTCTGGAAAACACCTGCTGAGAGAAGACGCGTTGTCTCAAAGCATGACCGCATTTATGAAGGCCAGAGTTGCTGCTGCTGTCGGCATTTTCGTCAATGCCGGTGGGTGGTGTTGTTGCCTTGCAGCTCCTGATGCTATTCCGTTTACCATTGCTACCAGATATTGTGATGTTCGAAGGCAGTTTGGATCTCAGAATGGTGGTCTTGAAACACAAACGGCAAGTGCTATCACACGACTGTCATTGCAGCAAAACAACCGTAGCCCTGCAAAGATCAAACCAAATCCACATCGAAGCTACTGCGACACAAACACACAAAAATCAGTCCAATTCCCAAAAAAAAAGAAAACACATATTCAAGTGAGTTACAATGGTGAATTGTTTCTTACCAGCAATGAAGTTTTGGAAATGAAGAGAATTGAGAAGGGGACCACAAGTTGA 2553 0.4144 MPVEPFESNKSCYVCSKSPVLLEINTNRSKLKDVVEKIIKAKLGMNLPLIMNASNLLYKAGDIEDDMVAIYDANLEKVLVELPSPVTGVCGKRDIPEGHCSSSVSVHTEGGTWDSETSPVAAECLIVLFVTFFDMVRSQLPGVVSVLTGFIRSHVQGPTSTRVAGLVLRTMSNVEVLKFSHSPDHDLINDEYDDDNLQTATYVVPRTKNHIAIQLLIFQGFAFCPISWNNWVFHRYEVRDGNGAGVRCLVEMHTTKKRQAYHTIYPTPNLLMRAPKWLNCHDVWGVWLKVLVLLWKVWTVRVTMYYFARFFWMPCLYGSADVGGLTTCMSYEPLRWLIFTNHFAQAYLFWRPDSGSTMRSLLDVASRLLDPNLESFGSLFVGSYILQLILHLPSQMAVHIRDLVAALVRRMQSAQIASLRSSLLVVFARLVHVSVPNVGQFIDLLISVPAEGHNNSFAYVMSKWAKQQEGNTIDGFHVSDFGAFGQPYRLEDVVALSGNSNSVFNSLKVSGKTISPGPVHFSTLGKFPTSLDKSPLENQTEPPRLQLTKLQSSNPSSSTILSVHIENQEEFAMADASHRTDISTDVDTDDKNQRFDTNQSLAVVGSDSSDRSKDKSDQKTLCRLTQNREAARKNRLRKKAYVQQLEKYARWLEEHNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKVDVFHLLSGKHLLREDALSQSMTAFMKARVAAAVGIFVNAGGWCCCLAAPDAIPFTIATRYCDVRRQFGSQNGGLETQTASAITRLSLQQNNRSPAKIKPNPHRSYCDTNTQKSVQFPKKKKTHIQVSYNGELFLTSNEVLEMKRIEKGTTS* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0446 850 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 22 83 IPR028077 -
Psa6g0446 850 Pfam bZIP transcription factor 619 660 IPR004827 GO:0003700|GO:0006355
Psa6g0446 850 Gene3D - 334 477 IPR011989 -
Psa6g0446 850 Pfam Seed dormancy control 658 708 IPR025422 GO:0006351|GO:0043565
Psa6g0446 850 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 617 661 IPR004827 GO:0003700|GO:0006355
Psa6g0446 850 MobiDBLite consensus disorder prediction 585 619 - -
Psa6g0446 850 Gene3D - 619 669 - -
Psa6g0446 850 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 623 637 IPR004827 GO:0003700|GO:0006355
Psa6g0446 850 SUPERFAMILY Leucine zipper domain 621 662 IPR046347 GO:0003700|GO:0006355
Psa6g0446 850 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 497 646 - -
Psa6g0446 850 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 647 707 - -
Psa6g0446 850 Coils Coil 645 672 - -
Psa6g0446 850 Gene3D - 15 91 - -
Psa6g0446 850 PANTHER TRANSCRIPTION FACTOR TGA9 647 707 - -
Psa6g0446 850 PANTHER TRANSCRIPTION FACTOR TGA9 497 646 - -
Psa6g0446 850 SMART brlzneu 615 675 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0446 Psa-Chr6 14661245 14665364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0446 573 707 bZIP Transcription Factor Family AT3G12250 52.809 4.88e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa6g0446 UAE_UbL 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0446 K14431 - gmx:100101881 320.087