Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0439 ATGGGAAGAGGTAAGATTGAGATCAAGAGGATTGAAAACTCAAGCAGCAGACAAGTTACCTATTCAAAGAGAAAGAACGGTATCCTTAAGAAAGCAAAGGAAATAAGTGTTCTCTGTGATGCTCAAGTTTCTCTTATCCTCTTTGGTGCTTCTGGAAAGATGCATGAATACATCAGTCCCTCCACCACGTTGATTGATGTTCTTGACAGATACCAAAGAGCTTCTGAAAAAACTCTTTGGGATGCTAAACATGAGAACCTTAGCAATGAAATTGATAGAATAAAAAAGGAGAATGACAACATGCAAATTGAACTCAGGCACTTGAAGGGAGAGGACATTACTTCACTGAATTACAAAGAGCTTATGTCCCTTGAGGATGCCCTTGAAAATAGCCTCATTTGA 402 0.3881 MGRGKIEIKRIENSSSRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYISPSTTLIDVLDRYQRASEKTLWDAKHENLSNEIDRIKKENDNMQIELRHLKGEDITSLNYKELMSLEDALENSLI* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0439 133 Pfam K-box region 81 132 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa6g0439 133 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Psa6g0439 133 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa6g0439 133 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa6g0439 133 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 132 - -
Psa6g0439 133 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa6g0439 133 ProSiteProfiles K-box domain profile. 84 133 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa6g0439 133 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Psa6g0439 133 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Psa6g0439 133 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 132 - -
Psa6g0439 133 Coils Coil 77 111 - -
Psa6g0439 133 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa6g0439 133 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa6g0439 133 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa6g0439 133 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0439 Psa-Chr6 14495703 14496346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0439 1 132 MADS-box Gene Family AT5G20240 68.939 1.45e-64 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa6g0439 K-box 6.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0439 K09264 - gmx:100795861 248.44