Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0422 ATGGCGAAACCTCACCCACCCAAGCGCCCCAAAATCAGCAGGGGGGATGATGATTATATGCCTGGAAACATTTTGGAGATCGAGCTTTATAATTTCATGACATTTGATTACTTAAAATGTAAACCCGGGCCTCGGTTGAATCTTGTAATTGGGCCGAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCTGTGGAGAGCCCCAGTTGCTTGGGCGAGCCACAAGTATTGGTGCATATGTGAAGCGGGGAGAAGAGTCTGGTCACATTAAGATTACTTTGAGAGGGGACTATAAAGAGGAGCGCATTACTATTATGCGTAAAATAAATACTAGCAACAAGTCTGAATGGTTTTTCAATGGAAATGTTGTGTCCAAAAAGGACGTGGCTGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTCTTACCGCAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTCTGGAAGAGACCGAAAAGGCTGTTGGCGATCCACAACTTCCAGAGCAACATCGTGCACTAATTGATAAAAGTCGTGCACTGAAGCATGTCGAGCTGTCTCTTGAGAAAAATGAAGGAACTTTAAATCAGTTGAAGGAACGTAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGACGAACTTCTTGCTAAGGCCGAATCAATGAAAAAGAAATTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAGTATCGTGAAGCTAAGGAGCGTGAAAAGACCGCTGCAAAGGAGTTTGAAAAGGCTGCAAAATTATTAAATGAAGTTAAAGAGCCTATTAAGAAACAAAAAGATGAGAAAGCTGCATTAGATGCAAAATGGAAAAAGGTTAGCAACCGAATAAATGAGAATGCCAAGAAAAGAATGGAACTTATGGAGAAAGAGAACCAATTGGAAGTGGAACAACAAGGGAAGTACAAAGAGATGGACGAGTTGAGGAGGCAGGAAGAAACTCAGCAACAGAAATTTAGAAAAGCTAGGGAGGAACTTGTTGCTGCTGAACTTGAACTTGAGAGTCTAAAACCTTATGCACCTCCCAGAGATGAGCTTCATAGATTAAGAAATGAAATTTTGGAGTTGGATGATTCTGCTAATCAAGTGAGACAGAATAAGTCACAAGCAGAAAACGAAATACATAATAAAAAGCTCTCCTTGATGAAGTGTAAAGACAGGTTGAAGGAAATGCATAATAAAAACTCCAAGTGTTTGCATGCATTGCAAAAATCAGGGGTTGAGAAAATATTTGAAGCTTATAAGTGGGTCCAAGAGCATCGCCATGAATTCAACAAGGAGGTTTATGGTCCAGTTTTAGTTGAGGTGAATGTCTCAGATCAGTCTCATGCTGGATATCTAGAGGGTCAAGTTGCTTACTACACTTGGAAGTCTTTCATAACACAGGATCCTCGTGATCGGGACTTTTTGGTAAACAACCTACGGTTCTATGATGTACCAGTTATAAATTATACTGGTCGTGATAGCCGACAAAGAGAGCCTTCCGAAATTTCTGCTGATATGCGCGCTCTTGGTATCCACTCCCGTTTGGATCAAGTTTTTGACGCTCCTGCTGCTGTCAAGGAGGTGTTGATTAGCCAATTTAAACTTGATCATTCATTTATTGGATCGAAAGAAACTGATCAGAAAGCTGATGAGGTCCCAAAATTGGGAATTACTAGTTTATGGACACCCGAAAATCACTATCATTGGACTAACTCTAGATATGGAAATCATGTCTCAGCAGTTGTCGAACAAGTGCAACGCCCACAACTTCTACTAAATAATTCAAATGCGAGGGACATTGAGAATCTGAACTCTCAGGAAAGGGAGTTTCAAGAACAAATTGCTTCCTTGGAGGAAATTATCAAAAAGTTTCAAGATGAGGAAAAAAGCTTGAGGAATCAGGCTGCTAATCTTCGTAAACAGAGGGAGGACATTAGTATTACAGCACAGAATGAGCAAAAGAAACGACAAGCAATAATTAGGCATATTGAACAAAAGAAACGGATACTGAAATCAATGGAGGAGCAGGATGATTTAGATACCGAGTTAGCGAAGCTTGTTGATCAAGCAACAAAATGTAACATTCAGCGATTCCATAATGCAATTAAAATTAAGGATCTTCTTGTTGAAGCTGTGGATTGCAAAAGAAGTTTAGTTGAACAGCGAATGGCTTTCATTGAATTCGAAGCAAAGATTGGAGAAATGGAGGCCAATTTGAAGCAGCATGAAAATTTTGCTCTGCAAGCATCATTGCACTTTAATAACTCTAAGAAAGAGGCTGATGAATGTAGACAGAAGCTTACAGATTTATTGAACTATGCTAAATCAATTGCCCGACTTACACCTAACCTTGAGAAGGAATTTCTCGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATCCAAGCTACAATTTCTCAAGCTAATTCAATCCTATTTGTCAATCCTAACATATTGGAACAATACGAGGATCGTCAAAGACAGATAGAAGATCTTACAAAAAAACTTGATGCAGACAAGAAGGAATCTAGAAAGTGTCTAGCTGAATTGGATAACATTAAGGGAAAATGGCTTCCAACACTCAGAAACCTTGTGGCTCAGATAAATGAAACTTTTAGTCGAAATTTTCAACAGATGGCGGTTGCCGGAGAGGTTTCACTAGACGAGCATGATATGGACTTTGATCAATTTGGAATACATATAAAAGTCAAATTCAGGGAAAATGGACAGCTTGAAGTTCTCTGTGCTCATCATCAATCTGGAGGGGAACGATCAGTTTCAACCATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAATTAGTGAGAGCAGCAAGCAAACCAAATACACCACAGTGTTTCTTACTTACCCCAAAGTTGTTACCAGATCTGCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATTGAGCAAACCTCAAAGGTCTGGACTACTGGGGATCGATGGAGTATTATCACTGGACAGGTTGGAGAGACCGCCTGTTAA 3159 0.3995 MAKPHPPKRPKISRGDDDYMPGNILEIELYNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGHIKITLRGDYKEERITIMRKINTSNKSEWFFNGNVVSKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDKSRALKHVELSLEKNEGTLNQLKERNAELEKDVERVRQRDELLAKAESMKKKLPWLKYDMKQAEYREAKEREKTAAKEFEKAAKLLNEVKEPIKKQKDEKAALDAKWKKVSNRINENAKKRMELMEKENQLEVEQQGKYKEMDELRRQEETQQQKFRKAREELVAAELELESLKPYAPPRDELHRLRNEILELDDSANQVRQNKSQAENEIHNKKLSLMKCKDRLKEMHNKNSKCLHALQKSGVEKIFEAYKWVQEHRHEFNKEVYGPVLVEVNVSDQSHAGYLEGQVAYYTWKSFITQDPRDRDFLVNNLRFYDVPVINYTGRDSRQREPSEISADMRALGIHSRLDQVFDAPAAVKEVLISQFKLDHSFIGSKETDQKADEVPKLGITSLWTPENHYHWTNSRYGNHVSAVVEQVQRPQLLLNNSNARDIENLNSQEREFQEQIASLEEIIKKFQDEEKSLRNQAANLRKQREDISITAQNEQKKRQAIIRHIEQKKRILKSMEEQDDLDTELAKLVDQATKCNIQRFHNAIKIKDLLVEAVDCKRSLVEQRMAFIEFEAKIGEMEANLKQHENFALQASLHFNNSKKEADECRQKLTDLLNYAKSIARLTPNLEKEFLEMPTTIEELEAAIQATISQANSILFVNPNILEQYEDRQRQIEDLTKKLDADKKESRKCLAELDNIKGKWLPTLRNLVAQINETFSRNFQQMAVAGEVSLDEHDMDFDQFGIHIKVKFRENGQLEVLCAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQTSKVWTTGDRWSIITGQVGETAC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0422 1052 Coils Coil 297 358 - -
Psa6g0422 1052 Gene3D - 23 231 IPR027417 -
Psa6g0422 1052 Pfam RecF/RecN/SMC N terminal domain 24 993 IPR003395 -
Psa6g0422 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 992 IPR027417 -
Psa6g0422 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1050 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Psa6g0422 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 776 1003 IPR027417 -
Psa6g0422 1052 Coils Coil 247 267 - -
Psa6g0422 1052 CDD ABC_SMC5_euk 925 1027 - -
Psa6g0422 1052 Coils Coil 372 406 - -
Psa6g0422 1052 Coils Coil 621 697 - -
Psa6g0422 1052 Coils Coil 194 235 - -
Psa6g0422 1052 Coils Coil 841 864 - -
Psa6g0422 1052 Gene3D - 843 1024 IPR027417 -
Psa6g0422 1052 CDD ABC_SMC5_euk 22 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0422 Psa-Chr6 13597033 13618078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0422 8 1041 Structural Maintenance of Chromosomes family AT5G15920 62.089 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0422 K22803 - gmx:100778678 1666.36