Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0421 ATGTTGTGTGCTTGTTCTGGAGAGCAATATAAATTTGAAGAGGTGCCACAATCACCTGATTCATTAGCAACAAGGGACTTCTCTGCTAGTGGATTGTCTTCAAGGACTGGAGATTGGGAATCTAAGTTCAATGAAAATCAAGTTGAAGATGTTGAATCTACTCTAAAAGAAGCTCTTTCATTAAACTATGAGGAAGCTAGAGCTTTGTTGGGGAGGCTGGAATATCAAAGAGGGAACTTTGGTGCTGCCCTTCAAGTGCTTCAGGGTATTGATATTGGTTCTTTGACCCCAAGGATGATCAGGGCTATAGCTGAAAGAAATAAGCAAAGAAAACCTCGTTCCAAGGCGGGTACCGTGCTTCCTAATTTGATGTCAATGCATTCAGTAAGCCTGCTTCTTGAAGCAATTTTGCTTAAAGCCAAATCCTTAGAGAAACTTGAGCGACATGAAGAGGCTGGGAAGGAATGCCGAATAATTGTGGATACAATTGAATCAGCACTTCCTAATGGAATGCCGGAAGGTATTGGTGAAGTTTGTAAGTTGCAGGAAATGTTCCACCAAGCATTGGAGTTGCTTCCAAATTTATGGATCAAGGCAGGTTTTCTAGACGAAGCTGTCACTGCTTATCGGCGTGCACTGGTCAAGCCTTGGAATATGGACCCGAGGAGGTTGGCCTGTCTACAAAAGGATTTAGCTACCACACTACTCTACGGCGGTGTTGAAGTAAACCTACCATCTCACTTGCAAGTGAATGCTCCAACAACGCCGATGAGTAACATCGAAGAAGCGATACTTTTGCTATTGATACTATCAAGAATGATGGCACTTCAGACAATAGACTGGGATGCTGAAATAATCGATCATCTTACATTTTCGCTTTCAATTACTGGGATGTTTGAATCATTGGCAGATTGTGTAGAGCAGATCCTACCAGGTATCTTCAGTCGAGCCGATAGGTGGTATTTTCTCGCTCTTTGTTACAGTGCAGCCGGAAACAACGAAGCAGCCTTGAACCTTTTGAGGAAGGTCTGTGGTAGCTCTGAATCAAAGCATACACCTCATTTTGCTTCGTATTTGTTTGGTGCAAAACTGTGTTCCCAATATCCAAATCATGCTCGCGAAGGCATCAAACTTTCACAACAAGTTATTGATCTATCCAAGCATCAAAACGAGCATTTTATAGTTCAAGGCCAACAAATTCTCGGTGTTTGTTATGGGGCAGCAGCTAGAACATCGGTAGTGGATTCTGAAAGAGTTACTTTTCAAAAAGAGTCTTTGAACTTTCTAAACGCAGCTGCTCTAACTGGAGATGAGAACGCTGAAGTGATGTTCAGCCTTGGACTCGAAAATGCGATTCAGAGGAATCTAGATGCGGCTTATCACAATATAATGAGGTACTCAGACATGACGGTTGGAAGCTTTGCAAGAGGTTGGCAGCTGTTAGCTCTCGTAGTATCTGCACAGAAGAGGTTTAAGGATGCCGAAACTATAGTTGATTTTGCTTTAGACGATGCCGGGAGCGTAGATCAGTTAGAGCTACTAAGACTCAAAGCTGTACTTCAAATTTCTCAGAAACAACCAAAGCAAGCTATAGAGACCTATAGAGTACTGTTAGCAGTAATAGAAGCCAGGAAGGAGCTTTCACTTCAAGCTAAGAACTTCGGGTTTGATCAAGCGAAAATATTCAGGGATGAGGCATTAACAGAACGAAACTTGGAAATGGAAGCATGGCAGGATTTAACAACCATTTATACAGATTTTAATTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAAGCTAAATTGGTCGAGTTTTTCTCTCCCAGAAGTTGGCATGTTACAGGGAAGTCGTTTGAAGCACAGTCATTATACAAGGAAGCCTTTGTTTCGTTCTCAATCTCATTGTCAATAGAACCTGATTATGTTCCAAGTATCATTTCAACTGCAGAGTTGTTGATTAAACTTGGTATGCAATCATTTCCAATGGCAAGAAGCTTTTTAATGAATGCTTTGCGATTGGAACCTACAAACCACGACGCGTGGTTCAATCTTGGAATGGTTTCGAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCTGCTTATGAGCTGAAGTTTACAACTCCAGTGCAAAAGTTTGAGTGA 2154 0.416 MLCACSGEQYKFEEVPQSPDSLATRDFSASGLSSRTGDWESKFNENQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFGAALQVLQGIDIGSLTPRMIRAIAERNKQRKPRSKAGTVLPNLMSMHSVSLLLEAILLKAKSLEKLERHEEAGKECRIIVDTIESALPNGMPEGIGEVCKLQEMFHQALELLPNLWIKAGFLDEAVTAYRRALVKPWNMDPRRLACLQKDLATTLLYGGVEVNLPSHLQVNAPTTPMSNIEEAILLLLILSRMMALQTIDWDAEIIDHLTFSLSITGMFESLADCVEQILPGIFSRADRWYFLALCYSAAGNNEAALNLLRKVCGSSESKHTPHFASYLFGAKLCSQYPNHAREGIKLSQQVIDLSKHQNEHFIVQGQQILGVCYGAAARTSVVDSERVTFQKESLNFLNAAALTGDENAEVMFSLGLENAIQRNLDAAYHNIMRYSDMTVGSFARGWQLLALVVSAQKRFKDAETIVDFALDDAGSVDQLELLRLKAVLQISQKQPKQAIETYRVLLAVIEARKELSLQAKNFGFDQAKIFRDEALTERNLEMEAWQDLTTIYTDFNSFLDAKACVDKAKLVEFFSPRSWHVTGKSFEAQSLYKEAFVSFSISLSIEPDYVPSIISTAELLIKLGMQSFPMARSFLMNALRLEPTNHDAWFNLGMVSKMEGSLQQAADCFQAAYELKFTTPVQKFE* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0421 717 Gene3D Tetratricopeptide repeat domain 556 715 IPR011990 GO:0005515
Psa6g0421 717 Pfam Tetratricopeptide repeat 317 346 IPR019734 GO:0005515
Psa6g0421 717 SUPERFAMILY TPR-like 511 709 IPR011990 GO:0005515
Psa6g0421 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Psa6g0421 717 PANTHER PROTEIN NPG1 1 716 IPR043376 -
Psa6g0421 717 Coils Coil 56 76 - -
Psa6g0421 717 SUPERFAMILY TPR-like 70 462 IPR011990 GO:0005515
Psa6g0421 717 Gene3D Tetratricopeptide repeat domain 275 555 IPR011990 GO:0005515
Psa6g0421 717 Gene3D Tetratricopeptide repeat domain 34 248 IPR011990 GO:0005515
Psa6g0421 717 PANTHER PROTEIN NPGR1 1 716 - -
Psa6g0421 717 SUPERFAMILY TPR-like 424 600 IPR011990 GO:0005515
Psa6g0421 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Psa6g0421 717 SMART tpr_5 317 350 IPR019734 GO:0005515
Psa6g0421 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Psa6g0421 717 SMART tpr_5 511 544 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0421 Psa-Chr6 13554910 13559535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0421 1 716 Calmodulin-binding Proteins AT1G27460 55.972 0.0 814