Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0416 ATGGCATTTGCAGGAACAACTCAGAAATGTATGGCTTGTACCAAAACTGTTTATCTTGTTGATAAATTGACTGCTGATAATAGAATCTTTCACAAAGCTTGTTTCAGATGTCATCACTGCAAAGGAACCCTCAAGTTGAGCAACTATAATTCTTTTGAGGGAGTTCTTTACTGTAAGCCACACTTTGATCAACTGTTCAAGAGAACTGGAAGTCTTGAAAAAAGCTTTGAAGGGACACCAAAAATTGCAAAACCAGAAAGAAGTAGTGATAATGAGAAACCTGCGGCGGTTAAAGCCTCAAGTATGTTTGGTGGAACAAGAGACAAATGTTCTGGTTGTCAGAAAACAGTTTATCCAACTGAGAAGGTTACAGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATTAGTCCTTCCAATTACATAGCACATGAGGGAAAACTTTACTGCAAACATCACCATGTTCAACTGATCAAGGAAAAGGGGAATTTAAGCCAGCTTGAAGGTGATCATGACAGAAATGCAAAAATCAACGGCGAATAA 567 0.3862 MAFAGTTQKCMACTKTVYLVDKLTADNRIFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPERSSDNEKPAAVKASSMFGGTRDKCSGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHVQLIKEKGNLSQLEGDHDRNAKINGE* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0416 188 Gene3D Cysteine Rich Protein 105 174 - -
Psa6g0416 188 Gene3D Cysteine Rich Protein 4 74 - -
Psa6g0416 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Psa6g0416 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Psa6g0416 188 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 183 - -
Psa6g0416 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Psa6g0416 188 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Psa6g0416 188 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Psa6g0416 188 Pfam LIM domain 10 64 IPR001781 -
Psa6g0416 188 Pfam LIM domain 110 164 IPR001781 -
Psa6g0416 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Psa6g0416 188 MobiDBLite consensus disorder prediction 77 100 - -
Psa6g0416 188 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Psa6g0416 188 MobiDBLite consensus disorder prediction 79 93 - -
Psa6g0416 188 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Psa6g0416 188 CDD LIM2_SF3 110 170 - -
Psa6g0416 188 CDD LIM1_SF3 6 68 - -
Psa6g0416 188 SMART lim_4 109 161 IPR001781 -
Psa6g0416 188 SMART lim_4 9 61 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0416 Psa-Chr6 13499570 13500657 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Psa6g0416 LIM 2.4e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0416 K09377 - gmx:100499947 371.703