Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0406 ATGGCAGTATTAACAGAGATAGAGGAAGATGAACTCGACGAAGAACCAGGTGAAGTAATCGAATCGGCACCGCCGCAAAAGATTGGCGAAGAGAGAAAACTCACTACTAATTCACCCATCAAAAAGAAGCTCCTTAAACGCGGTCTCGGTTGGGAAACCCCCAATTTCAACGATCATGTTACTGTTCATTATGCTGGAACTTTGCTTGATGGAAGAAAATTGGGTTCCACAAGGGTTTCGGATTCTCCTGTGACATTTACACTTGGCCAAAGTGAAGTGTATGCTGGATTAGATGATGGGATTGTCACCATGAAGAAGGGAGAGGTGGCATTGTTTACATTACCTGCTGCCGAGTCTGGAGGCATTCCACGAGGCACCAACTCAGTTGTGCAGTTTGAAGTGGAACTCGTTTCTTGGATCACAGTGGTGGATGTTTGCAAAGATGGTGGAATTATCAAGAAAATTATGGAGAAGGGGAAAGGGAATGATCGGCCCGGTGATCTTGATGAAGTTCTTGTGAAGTATCAGGTGGCACTAGTTGATGGCACCGTTGTTGCAGAAACACCGGAAGGAGGAGTTGAATTCTATGTGAAGGATGGTCATGTGCTTTCTAGATTGCCGAAAGTGATCATGACTATGACCAGGGGAGAGAAGGCTGAATTAACTTTTCAACCTCAATATGCCTTTGGGGATACGGGGAGAGAAGCTGGCAGCGGGTTCCATTCAATTCCCCCAGACTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCCGTCATAAATGTTACTGGTGACTCTATGGTGATTAAGAAAATTTTGAAGGAAGGGGAGGGTGCTTTCACAGCCAACGAGGGTGCAAATGTTACTGTCAGTTACACAGCTATGCTAGAAGATGGCACTGTATTTGAGAAAAGAGGAATTGGTGAAATACAGCCCTTGAAATTTGTAACTGATGAGGAACAAGTGATTACTGGTCTAGACCGAGCAGTGGCAACAATGAAAAAGGGCGAGAAGGCCATAGTTAGTATACATCCTGATTATGCATTTGGAAATGTGGAAGTGAGACAAAATCTGGTTATTGTGCCACCTGGCTCGAAAGTAGTCTATGACATTGAAATGATAGATTTTATTAAGGAGAAAGCACCATGGGAGTTAACTAATGCTGAGAAAATTGAGGTAGCTGGGAGGAAGAAAGAAGAAGGAAATTTATTATTTAAAAGTGGCAAATATCAGCGAGCTGCGAAAAAGTATGATAAGGCTGCTGATTTTGTTAGCGAAGATGGATCCTTCGGTGATGATGAGCAAAAGCTAGCTAAGTCGTTGAGACTTTCATGCTGGTTGAATGGTGCAGCCTGTTGCCTTAAACTGAATGACCTTACTGGAGCAATCAAATTTTGTACTCAGGTACTTGATGTTGAGTTTCACAACGTGAAAGCTTTGTATAGACGAGCGCAGGCATATATAGAGACGGGAGACTTTCTTTTTGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGATCCACAAAACAGGGAGGTAAAGGTGCTGAAAATGAAAGTGAAGCAACTTCAAGCTGATAGTGACAAAAAAGATGCTAAACTGTATGAAAATATGTTTGCGCATAAACAAGAGATTGAAGGTTGA 1650 0.4273 MAVLTEIEEDELDEEPGEVIESAPPQKIGEERKLTTNSPIKKKLLKRGLGWETPNFNDHVTVHYAGTLLDGRKLGSTRVSDSPVTFTLGQSEVYAGLDDGIVTMKKGEVALFTLPAAESGGIPRGTNSVVQFEVELVSWITVVDVCKDGGIIKKIMEKGKGNDRPGDLDEVLVKYQVALVDGTVVAETPEGGVEFYVKDGHVLSRLPKVIMTMTRGEKAELTFQPQYAFGDTGREAGSGFHSIPPDSVLHVNIELVSFKPVINVTGDSMVIKKILKEGEGAFTANEGANVTVSYTAMLEDGTVFEKRGIGEIQPLKFVTDEEQVITGLDRAVATMKKGEKAIVSIHPDYAFGNVEVRQNLVIVPPGSKVVYDIEMIDFIKEKAPWELTNAEKIEVAGRKKEEGNLLFKSGKYQRAAKKYDKAADFVSEDGSFGDDEQKLAKSLRLSCWLNGAACCLKLNDLTGAIKFCTQVLDVEFHNVKALYRRAQAYIETGDFLFADVDIKKALEVDPQNREVKVLKMKVKQLQADSDKKDAKLYENMFAHKQEIEG* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0406 549 Gene3D Tetratricopeptide repeat domain 384 539 IPR011990 GO:0005515
Psa6g0406 549 MobiDBLite consensus disorder prediction 1 35 - -
Psa6g0406 549 SUPERFAMILY FKBP-like 33 141 - -
Psa6g0406 549 PANTHER PEPTIDYLPROLYL ISOMERASE 378 545 - -
Psa6g0406 549 PANTHER PEPTIDYLPROLYL ISOMERASE 261 378 - -
Psa6g0406 549 PANTHER PEPTIDYLPROLYL ISOMERASE 6 265 - -
Psa6g0406 549 SUPERFAMILY TPR-like 391 543 IPR011990 GO:0005515
Psa6g0406 549 SMART tpr_5 445 478 IPR019734 GO:0005515
Psa6g0406 549 SMART tpr_5 479 512 IPR019734 GO:0005515
Psa6g0406 549 SMART tpr_5 396 429 IPR019734 GO:0005515
Psa6g0406 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 140 IPR001179 GO:0003755
Psa6g0406 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 261 378 - -
Psa6g0406 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 265 - -
Psa6g0406 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 378 545 - -
Psa6g0406 549 MobiDBLite consensus disorder prediction 1 18 - -
Psa6g0406 549 SUPERFAMILY FKBP-like 265 396 - -
Psa6g0406 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 165 256 IPR001179 GO:0003755
Psa6g0406 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 376 IPR001179 GO:0003755
Psa6g0406 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 136 IPR001179 GO:0003755
Psa6g0406 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 287 379 IPR001179 GO:0003755
Psa6g0406 549 Gene3D - 5 141 IPR046357 GO:0003755
Psa6g0406 549 Gene3D - 260 383 IPR046357 GO:0003755
Psa6g0406 549 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Psa6g0406 549 Gene3D - 142 259 IPR046357 GO:0003755
Psa6g0406 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 259 IPR001179 GO:0003755
Psa6g0406 549 SUPERFAMILY FKBP-like 144 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0406 Psa-Chr6 13213664 13217648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0406 27 542 Calmodulin-binding Proteins AT3G25230 52.874 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0406 K09571 - gmx:100798382 823.157