Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0404 ATGGTGGAAGGGACTATGTCTCTTGATGCTGTTATAAAGGAAGCTGTTGATTTGGAGAACATTCCTATTGAGGAGGTATTTGATAATCTAAAATGCACAAAAGAAGGTTTAACCTCCTCTGAGGAAGTACAAGAGAGGCTTGACATGTTTGGATACAATAAACTTGAAGAAAAAAAGTTTTTAGGGTTTATGTGGAATCCTTTGTCATGGGTTATGGAAGCTGCTGCTCTCATGGCCATTGCTATGGCACATGGAGGGAGAAAATATGCTGGTAATGCAGCTGCTGCCCTTATGGCAAGATTGGCTCCAAAAGCAAAAGTACTTCGTGACGGAAAATGGAGCGAAGAAGATGCTTCGTCTGCTCTTACCGGAGAGTCACTCCCTGTGACTAAACATCCCGGAGAAGGAGTATATTTGGTCAACTGCAAGCAAGGAGAAATTGAAGCCGTAGTCATAGCAACTGGAGTTCACACATTTTTCGGAAAGGCAGCTCATCTCGTCGAAAACACAACACACGTTGGACATTTCCAACAGGTTTTTGCCAAAGGTGTTGGCAAGGATTTGGTTGTACTTATGGCTGCAAGAGCATCAAGGATGGGAGAACCAAGATGCAATGATTGCGCAATCGTCAATGTTGGCAGACCCAAAGGAGGCACGAGCTGGAATAAGAAGTTCATTTCCTTCCGTTTAATCCAACTGATAAAAGAACTGCCCTTACATACATTGATGGTGCTGGTAATATGCACAGGGTTAGCAAAAGATTCTCAATCTTGCACAAAACAAGGCAGAAATCGAACGGAAGTTCATGCGATGATGACAAAGTTTGCAGAACGTGGACTTCGTTTCTCTTGGGATTGCAGACAG 864 0.4329 MVEGTMSLDAVIKEAVDLENIPIEEVFDNLKCTKEGLTSSEEVQERLDMFGYNKLEEKKFLGFMWNPLSWVMEAAALMAIAMAHGGRKYAGNAAAALMARLAPKAKVLRDGKWSEEDASSALTGESLPVTKHPGEGVYLVNCKQGEIEAVVIATGVHTFFGKAAHLVENTTHVGHFQQVFAKGVGKDLVVLMAARASRMGEPRCNDCAIVNVGRPKGGTSWNKKFISFRLIQLIKELPLHTLMVLVICTGLAKDSQSCTKQGRNRTEVHAMMTKFAERGLRFSWDCRQ 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0404 288 SUPERFAMILY Calcium ATPase, transduction domain A 119 167 IPR008250 -
Psa6g0404 288 Gene3D - 119 154 - -
Psa6g0404 288 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 182 IPR023298 -
Psa6g0404 288 PANTHER PLASMA MEMBRANE ATPASE 89 119 - -
Psa6g0404 288 PANTHER PLASMA MEMBRANE ATPASE 179 282 - -
Psa6g0404 288 PANTHER PLASMA MEMBRANE ATPASE 119 179 - -
Psa6g0404 288 PANTHER PLASMA MEMBRANE ATPASE 4 88 - -
Psa6g0404 288 SMART Cation_ATPase_N_a_2 17 84 IPR004014 -
Psa6g0404 288 Pfam E1-E2 ATPase 119 186 - -
Psa6g0404 288 Pfam Cation transporter/ATPase, N-terminus 20 78 IPR004014 -
Psa6g0404 288 Gene3D - 155 170 - -
Psa6g0404 288 Gene3D - 63 112 - -
Psa6g0404 288 PANTHER CALCIUM-TRANSPORTING ATPASE 4 88 - -
Psa6g0404 288 PANTHER CALCIUM-TRANSPORTING ATPASE 179 282 - -
Psa6g0404 288 PANTHER CALCIUM-TRANSPORTING ATPASE 119 179 - -
Psa6g0404 288 PANTHER CALCIUM-TRANSPORTING ATPASE 89 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0404 Psa-Chr6 13030655 13033484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0404 178 281 Primary Pumps ATPases AT3G60330 32.203 5.69e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0404 K01535 - gmx:100794938 263.848