Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0392 ATGAAGTCTATGATGAATGATAGTAATAACACTAGTGATGATGGAAACAATCATAACTGGTTAGGTTTCTCTCTCTCACCCTACCATATGAAAATGGAGCTTACTTCTTCTGACCCTTCTCATCAGTACTATCATCATGATAACAACCAACCTTCTTCTTCTGTTCTTGTTCCCTCTAACTTCTACATGTCACCTCCCCATTTAAACATTAACAACACTTCTTCATTGTGTTACTATGGTGTTGGATCAGATAACACTGCTTCTTTTCATTCTTCTTTGCCTATGATGCCTCTTAAATCGGATGGTTCTCTTTGCACTATGGAAGAAGCTCTCTCTACTTCACAATCACAAGTGATGTTACCAACTTCATCTCCAAAACTAGAAGATTTCTTAGGTGGTGCAACAATGGAAACTCATCATCATGAGTATGAAGGACATGAGAGAGAAACAATGGCTTTATTAAGCTTAGACAGCATCTACTACAACAACAATGCGGAACATGAGACAACAAATAGAGAACATTCTCCTCTTGACATTTCACCTTACTACACAGGGTTTACTTGTCATGGAATGTATCAAACACCATTGATGGAACAAAACCAACAACAAGAAGAAGAAGGAACAAAGGAAGAAAACATGTATTGCTTCAAGAACTTTGTGGCTCCTAGAGATTATTCCATGGAGCAGCAGCAGCACCATGAGAACAACAATGGTGGTAGCATTGGAGACGATGGTTGTGTTGGAACAGTGAATGGTTATGGAGAGTTACAGTCGTTGACTCTTTCTATGAGTCCTGGTTCACAATCAAGCTGTGTTACTGTTCCAACTCAGATTTCACCTTCTGGTAATAATGATTCAGTTGTTGTGGAAGCTAAAAAGAGAGGACATGGTAAAGTTGGACAAAAGCAACCTGTTCATAGGAAATCTATTGATACATTTGGTCAGAGAACTTCACAGTACCGAGGAGTAACTAGGCATAGATGGACAGGTAGATATGAGGCACATTTATGGGATAACAGTTGTAAGAAGGAAGGACAAACAAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGATATGGAAGTGAAAGCTGCAAGAGCTTATGATCTTGCTGCTCTTAAATATTGGGGACCTTCAACCCACATAAACTTTCCGCTTGAAAATTATCGATGTGAACTTGAAGAAATGAATAATATGAATCGGCAGGAATATGTTGCTCACTTGAGAAGAAAGAGTAGCGGCTTTTCACGGGGTGCCTCGATGTATAGAGGCGTGACAAGGCACCACCAACATGGTAGATGGCAGGCAAGGATAGGCAGAGTTGCCGGAAATAGGGATCTCTATCTTGGAACATTTAGCACTCAAGAGGAAGCTGCTGAATCATATGATGTAGCCGCAATCAAATTCCGTGGCTTAAACGCGGTCACAAATTTTGAAATATCTCGATACAATGTCGAAAAAATCATGTCAAGCAACACACTTCTTTCCGGAGAACAAGCTAAAAGAACAACAACAAGAATCAAAGACAGTGAAGAGCCAAAATCCGAAGCGAAAGAGTGTAACAACAATGTTGTATCAAGTTCAAGTCCAATCCTAAATAACCAAGAAGTTGAAGCTGTGAACAAGAATGAAAACAATTGGAATCAGTCCCCACAACAAGAGTCAAACACATGTGATCAAAAAACTGACTTTTCTATGTCCCTACAAGATATCATTGGGATTGATTCTGTAGATGATTCCTCCAACAAGATGATAAGGACTCATTTTTCAAATTCATCTTCACTTGTGACTAGTTTAAGTAGCTCAAGAGAATGCAGCCCTGACAACAAAAGCAATGGCCCCACCATGAATTTTCCTAAACCTCCAATAGGGTCTAAAATGGTTAGTCCTATAGCTACTAGGGTTGGATCTTGGTTTCCCTCAGGTGGTTCCATCTCAGTGTCTCATTTGCCCGTTTTCGCGGCTTGGAGCGATATTTAG 1980 0.399 MKSMMNDSNNTSDDGNNHNWLGFSLSPYHMKMELTSSDPSHQYYHHDNNQPSSSVLVPSNFYMSPPHLNINNTSSLCYYGVGSDNTASFHSSLPMMPLKSDGSLCTMEEALSTSQSQVMLPTSSPKLEDFLGGATMETHHHEYEGHERETMALLSLDSIYYNNNAEHETTNREHSPLDISPYYTGFTCHGMYQTPLMEQNQQQEEEGTKEENMYCFKNFVAPRDYSMEQQQHHENNNGGSIGDDGCVGTVNGYGELQSLTLSMSPGSQSSCVTVPTQISPSGNNDSVVVEAKKRGHGKVGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEVKAARAYDLAALKYWGPSTHINFPLENYRCELEEMNNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNRDLYLGTFSTQEEAAESYDVAAIKFRGLNAVTNFEISRYNVEKIMSSNTLLSGEQAKRTTTRIKDSEEPKSEAKECNNNVVSSSSPILNNQEVEAVNKNENNWNQSPQQESNTCDQKTDFSMSLQDIIGIDSVDDSSNKMIRTHFSNSSSLVTSLSSSRECSPDNKSNGPTMNFPKPPIGSKMVSPIATRVGSWFPSGGSISVSHLPVFAAWSDI* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0392 659 SUPERFAMILY DNA-binding domain 318 387 IPR016177 GO:0003677
Psa6g0392 659 CDD AP2 318 385 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 Pfam AP2 domain 319 377 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 Pfam AP2 domain 422 471 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 PRINTS Ethylene responsive element binding protein signature 320 331 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 PRINTS Ethylene responsive element binding protein signature 461 481 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 655 - -
Psa6g0392 659 ProSiteProfiles AP2/ERF domain profile. 319 385 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 ProSiteProfiles AP2/ERF domain profile. 421 479 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 655 - -
Psa6g0392 659 SMART rav1_2 421 485 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 SMART rav1_2 319 391 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 CDD AP2 420 481 IPR001471 GO:0003700|GO:0006355
Psa6g0392 659 SUPERFAMILY DNA-binding domain 420 481 IPR016177 GO:0003677
Psa6g0392 659 Gene3D AP2/ERF domain 421 481 IPR036955 GO:0003700|GO:0006355
Psa6g0392 659 Gene3D AP2/ERF domain 318 387 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0392 Psa-Chr6 12412874 12416825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0392 1 507 AP2-EREBP Transcription Factor Family AT4G37750 52.416 1.56e-154 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Psa6g0392 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0392 K09285 - gmx:100798179 764.992