Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0387 ATGGGTGGTGAAGAAAAAGCCATGGAGTTTCAACATGGGAATGAGAACATTATGACTTCAGAAATGGATATGAGTTCTGTGTCAATGGTCAATAAACCTTCTTCAGAGGTAGTTAATCATCATCAACATCATCCTTTCCTTGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGGGGTTCTTCAATGGTTTCTCACAATGAGTTTGCTAATACAAATTCAACTTATAACCCTCTTGTTTTGGAGAATCATCAAGGAATGAGTAGCACCTCTCACCTTGTTCAATACTCAAATCTCGGTGGCATGATCCACAAGGTTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGTGATCATGTAGCTAACACATCAGGATATCCTATTCCACCACAACATTATAACCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTCATGGCGAACAATCTCAAGTTGAGGACTCAATTCATGAGGATGGAGCTCTAGGATCTGGACCTAGCAGTGGAAATAGAAGAAAGAGAGGATTTGATCAAAATTCTAATTTCAGTCCAAATAAGAATGCTGAGGGTGATGGGGTGAAAGATTCTCCCAGGAAGATCTCTGATGGTTCAAAAGAACATGAAAAGAAACCAAAAGTTGAGCAATCAGGGAAGCAAGCTAAAGACAACTCTCCTAGTGGAGACGCCTCAAAAGATAATTTCATTCATGTAAGAGCTAGAAGAGGTCAAGCCACCAACAGTCATAGTCTTGCAGAAAGGGTTAGAAGAGAAAAAATAAGTGAACGTATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCTATGAAACTTGCCACCGTGAACCCTGAACTGAACTTTGATGTAGAGCGGCTCTTATCCAAGGATATTCTCCAGTCACGCTTAGGACTCGGAATCGGTGGATTTGTTCCTGGTATAAGCTCCTCTCATCCATTCCCAAATTCAAGTTTCCAGGGAAACATGGCTGGCCTGCCTAGTTCATCAACACAATTCCCTCCTTTGCCTCAGAATGTTTTGGACCATGACTTCCAAAGCTTTTATGGAATGGGATATGATTCTAATACAGCACTTGATAATTTGGGACCCAATGGAAGGTTGAAACCAGAGTTATAG 1260 0.4103 MGGEEKAMEFQHGNENIMTSEMDMSSVSMVNKPSSEVVNHHQHHPFLASSAWDNPLVSLSQAHTFGGSSMVSHNEFANTNSTYNPLVLENHQGMSSTSHLVQYSNLGGMIHKVPSYGSGSFSEMVGSFGQHGDHVANTSGYPIPPQHYNHIKDAGIQRGQIHGEQSQVEDSIHEDGALGSGPSSGNRRKRGFDQNSNFSPNKNAEGDGVKDSPRKISDGSKEHEKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRLGLGIGGFVPGISSSHPFPNSSFQGNMAGLPSSSTQFPPLPQNVLDHDFQSFYGMGYDSNTALDNLGPNGRLKPEL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0387 419 MobiDBLite consensus disorder prediction 207 233 - -
Psa6g0387 419 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 18 419 IPR024097 GO:0006355
Psa6g0387 419 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 18 419 - -
Psa6g0387 419 CDD bHLH_AtBPE_like 249 334 - -
Psa6g0387 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 327 IPR036638 GO:0046983
Psa6g0387 419 MobiDBLite consensus disorder prediction 187 203 - -
Psa6g0387 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 309 IPR011598 GO:0046983
Psa6g0387 419 SMART finulus 265 315 IPR011598 GO:0046983
Psa6g0387 419 MobiDBLite consensus disorder prediction 161 247 - -
Psa6g0387 419 Pfam Helix-loop-helix DNA-binding domain 262 310 IPR011598 GO:0046983
Psa6g0387 419 Gene3D - 256 330 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0387 Psa-Chr6 12253866 12258696 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0387 1 419 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.972 5.08e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g0387 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0387 - - gmx:100794464 578.17