Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0379 ATGGCTCTAGAAGCACTTAACTCACCCACCACTACTACTACCCCAAAATTCACCTTCAATCAACCATCTCTTCATCACTCTGAACCATGGACCAAACGAAAACGTTCTAAGCGTTCACGTTCATGCACTGAAGACGAATATCTCGCTCTCTGTCTCATCATGCTAGCTCGCGGAACCACCACCTCCAACAACCGCCTCAGTTTCAAACCATCACCGACAACAACAACAACAATCGCTGACAAGCTGAGCTACAAATGTTCTGTTTGCAACAAAGAGTTCTCTTCTTATCAAGCACTTGGTGGACATAAAGCCAGTCACCGGAAAAACTCCACCGGCGGTGGTGATGACCATTCAACTACATCAAGTTCTGCTAACGCCGCCGTTGTAAGCGGTGGCGGTGTTAGATCTCATGAATGTTCGATTTGTCATAAGTCGTTTCCTACAGGACAGGCTTTGGGTGGACACAAACGTTGTCACTACGAAGGCGGTATTGGCGGTGCTGCGGCGGTAACTAACTCAGAAGGTGTGGGGTCCACACATACTGCTAGTCATAGTCAAAGTCACCGCGATTTCGATCTGAACATCCCGGCTTTTCCGGAGTTTGGTGATAATAAGGTCGGAGAAGACGAGGTTGAAAGTCCTCACCCTGTGATGATGATGATGATGAAGAAGAAGCCTCGTGTTTTCATGGTGCCCAAGATTGAAATTCCTAATCACCAATGA 723 0.473 MALEALNSPTTTTTPKFTFNQPSLHHSEPWTKRKRSKRSRSCTEDEYLALCLIMLARGTTTSNNRLSFKPSPTTTTTIADKLSYKCSVCNKEFSSYQALGGHKASHRKNSTGGGDDHSTTSSSANAAVVSGGGVRSHECSICHKSFPTGQALGGHKRCHYEGGIGGAAAVTNSEGVGSTHTASHSQSHRDFDLNIPAFPEFGDNKVGEDEVESPHPVMMMMMKKKPRVFMVPKIEIPNHQ* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0379 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Psa6g0379 240 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Psa6g0379 240 MobiDBLite consensus disorder prediction 114 129 - -
Psa6g0379 240 SUPERFAMILY beta-beta-alpha zinc fingers 84 159 IPR036236 -
Psa6g0379 240 MobiDBLite consensus disorder prediction 1 38 - -
Psa6g0379 240 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Psa6g0379 240 MobiDBLite consensus disorder prediction 100 129 - -
Psa6g0379 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Psa6g0379 240 MobiDBLite consensus disorder prediction 1 26 - -
Psa6g0379 240 Pfam C2H2-type zinc finger 84 108 - -
Psa6g0379 240 Pfam C2H2-type zinc finger 137 160 - -
Psa6g0379 240 SMART c2h2final6 137 159 IPR013087 -
Psa6g0379 240 SMART c2h2final6 84 106 IPR013087 -
Psa6g0379 240 Gene3D Classic Zinc Finger 82 159 - -
Psa6g0379 240 PANTHER ZINC FINGER PROTEIN ZAT10 1 222 - -
Psa6g0379 240 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 222 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0379 Psa-Chr6 11873209 11874572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0379 1 236 C2H2 Transcription Factor Family AT1G27730 54.618 7.13e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g0379 zf-C2H2_6 2.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0379 - - gmx:547886 265.003