Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0378 ATGGAACTTATAGGATCTTTCCCTGATGGAGAATGGGATTTCTTTAGCAAAATGTTTGCTAGTGAGGATCATGAACACTACTCTCAACAATTTCTTGATCAAAACTCTCTTCTTCTTGATGATGGATTGAACAATGAATCACAATCCACATTTTGCTCCGTCGAAACCGGTGAAAAAGAGTGTATGTTTTATTCTTTTGATCATGCTAATATCTCAAACTCACATTATATTTCTCAATCTCAAGAGAATAGTTATGGTAGCAATTGTAGTGCTAATGATGATACAAATTACTATTTTAGTCATCCTAATCAAGTGCTAGCAAATAATATGAATAGTTCCATTTCCATGGATGAGAAACTTTTTGCTTCTTTTGTCACACCCTTTAATGAGATTGTAATGGAAGAGAATGCGAAATTGAATGAAGATGCTTTTGGAAGTGGTGATCATATTTTGGAGAAAAATGATTACATTAATACTCAAATAATGGAAGAACATGTTGATTTTCCAAACAAGCACGACATGGAAATGCATCTCAAAAGGAAACTCGGCGCCATAGAAGTTGAAGTTCCTCTTGAAGAAAAAATCAACAACAATTCCGAGAAACCCAAGAAAAAACCCCGCGTCTCAAAAGATGGCATGAAAAATGCAAGGTCTAAGAAGAAGCTTATTGGTAGCAATGAAGAGGAGAATGAAGAGATTAATAATAGCTCTAGTAGTAACATTTCTGAGGATGAAAATGGTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAAACAAGAGCTAGTAGAGGATCAGCAACAGATCCACAAAGTCTCTATGCAAGGAAAAGAAGAGAGAGGATAAATGAGAGACTAAGAATTCTACAGAATCTTGTACCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAAGCAGTTAATTATGTGAAATTTTTGCAAGTTCAAATCAAGCTTTTGAGTTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACATTGGACTCAATCTCAATCTCAACAGTTCTTTGCCACTTTGA 1068 0.3511 MELIGSFPDGEWDFFSKMFASEDHEHYSQQFLDQNSLLLDDGLNNESQSTFCSVETGEKECMFYSFDHANISNSHYISQSQENSYGSNCSANDDTNYYFSHPNQVLANNMNSSISMDEKLFASFVTPFNEIVMEENAKLNEDAFGSGDHILEKNDYINTQIMEEHVDFPNKHDMEMHLKRKLGAIEVEVPLEEKINNNSEKPKKKPRVSKDGMKNARSKKKLIGSNEEENEEINNSSSSNISEDENGSQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMWMYAPLAYNGLDIGLNLNLNSSLPL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0378 355 CDD bHLH_AtIND_like 270 332 - -
Psa6g0378 355 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 353 - -
Psa6g0378 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 353 - -
Psa6g0378 355 Gene3D - 271 327 IPR036638 GO:0046983
Psa6g0378 355 MobiDBLite consensus disorder prediction 229 273 - -
Psa6g0378 355 Pfam Helix-loop-helix DNA-binding domain 279 319 IPR011598 GO:0046983
Psa6g0378 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Psa6g0378 355 SMART finulus 275 324 IPR011598 GO:0046983
Psa6g0378 355 MobiDBLite consensus disorder prediction 193 281 - -
Psa6g0378 355 MobiDBLite consensus disorder prediction 193 228 - -
Psa6g0378 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0378 Psa-Chr6 11768371 11770339 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0378 231 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 74.783 8.20e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g0378 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0378 - - cam:101488422 397.512