Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0334 ATGCCTAGAATGTCAATGAATAGATCATTATGGTTGCCAATATCCAATCCAACAACATACCAATCCTTAATGGATCCAATTCCAATTCCAACTCAATCTCATTCTCTTGTATGGCAAGAAACGTGGCCATTCATTCTTGCAACCCTATCAATTTATTTTTGTGTTTCCGCTAGTCTTTTATATGGACTCTACGGCGATTCTCGCTTGATTCTTGGTCCAAGTTCATCGCGTTTGGTGAAAACAAGTTCAGTTTTTGTCGAACAAATTCAAGTAACTAATGAGTATACTAGTAAAAATGAAGTTCATCTTTATGCTTTCGACGAGAAACCCGAGTTAAGTTCAGAAATAAATTGGACTACGTCGAAGTTTTTGGCTGTTCAATCATATAGTCGCAAGGGAATTTCTTTGTGGTTAAATAAAGGGTCTACTATATTTTTGAGGTGGGAAGCAGATGCTGGTAGTTTAAATCAACTTGAAGGGATGGTGATTAAAGGAGAAATGAAGTATGAAAAACTAAAGCCTAAACAGACTACCTTCCCCAAGGCAATGCCAATTGTTGTTAGAAACACTAACAATGGTAAGGAAGCTGAATACATTGTTGAGGAAGATGATAGGTACCACATTGGTGTTCTGAATATGAATCCAAGGGACATAATCTTGACCATGAATGTCAATGTTTCTGCAAAGATATATGATACTACAAAGTCCACAAATATGTGCTCTACTAGGAATGGGTCATGCAAACTTGGCACTTTTTTCCCTATCACATATTATGTAATTCGCATATCACCAAAAAATGGAAATAATAATTATGACAATGATGATGATGCATGGTATGTTGAAGTTACATTTTTAGCTCGTGTTTTTTCCTACATAATTCTTTTAGGACTTTTCATGGTGGTGATTTTTCTGATATTGAAATGTCTTGGACCTGGTAATGATGGTGATAACTACAATGTAGTTGCACAGCAACGAGTAACCGAAACCGAACCTCTCGTGCGTGCGCAGACGAATATAGTGACATATGGAACAAACAAATTTCATGAAAAGAAAGACTTGGACTCAGAATCAGAATCCGATGCGTCGAGTAGTTCTTCGGAGGAGTTATACAATGAAAAATTGTGTATAATTTGTTATGATGAGCAGAGAAATTGTTTCTTTGTTCCTTGTGGTCATTGTGCTACTTGCTATGATTGTGCACAAAGGATTGTGGATGGACAGAGTAAGGTTTGTCCGGTATGCAGGAGACTTCTTCATAGAGTAAGAAGATTGTTCAATAGTTAG 1284 0.3676 MPRMSMNRSLWLPISNPTTYQSLMDPIPIPTQSHSLVWQETWPFILATLSIYFCVSASLLYGLYGDSRLILGPSSSRLVKTSSVFVEQIQVTNEYTSKNEVHLYAFDEKPELSSEINWTTSKFLAVQSYSRKGISLWLNKGSTIFLRWEADAGSLNQLEGMVIKGEMKYEKLKPKQTTFPKAMPIVVRNTNNGKEAEYIVEEDDRYHIGVLNMNPRDIILTMNVNVSAKIYDTTKSTNMCSTRNGSCKLGTFFPITYYVIRISPKNGNNNYDNDDDAWYVEVTFLARVFSYIILLGLFMVVIFLILKCLGPGNDGDNYNVVAQQRVTETEPLVRAQTNIVTYGTNKFHEKKDLDSESESDASSSSSEELYNEKLCIICYDEQRNCFFVPCGHCATCYDCAQRIVDGQSKVCPVCRRLLHRVRRLFNS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0334 427 ProSiteProfiles Zinc finger RING-type profile. 375 415 IPR001841 -
Psa6g0334 427 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 35 426 - -
Psa6g0334 427 Pfam Domain of unknown function (DUF4792) 102 167 IPR032008 -
Psa6g0334 427 PANTHER OS05G0521000 PROTEIN 35 426 IPR044586 GO:0004842
Psa6g0334 427 SUPERFAMILY RING/U-box 366 421 - -
Psa6g0334 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 426 IPR013083 -
Psa6g0334 427 Pfam Zinc finger, C3HC4 type (RING finger) 372 418 - -
Psa6g0334 427 SMART ring_2 375 414 IPR001841 -
Psa6g0334 427 Pfam Domain of unknown function (DUF4793) 196 304 IPR032010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0334 Psa-Chr6 10291917 10294523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0334 357 425 C3H Transcription Factor Family AT1G62370 33.333 6.68e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0334 - - cam:101496542 567