LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g0295	ATGGACGGTTACGATGGAACCGTTAGGCTTGGAGCTATTAACATGAAGTATGATCGCGGTGACTTTGACTCCGGTGCCGACGTGTCGGTTTCTTCTCCGGTTACTAAACAGAAAGCCGCCGCCGCTAAGCAATTCATCGAGAATCATTACAAGAATTATCTTCAAGGATTGCAGGATCGCAAAGATAGACGTAGAGCGCTTCAAAGGAGAGTGCAGGAATCTCAATTACCAGTGGAAGAGCAGGAAGTGATGATGAGGAATTTGGAACGTAAAGAAACCGAGTACATGAGACTTCAAAGACGTAAAATTGGAATTGATGACTTTGAGCAATTAACAGTAATTGGTAAAGGTGCTTTCGGTGAGGTTAGGTTATGCCGTGGTAAAAGTTCTGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGCCGTGGGCAGGTGGAACATGTACGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCCGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCAGATTTCCTATATCTCATCATGGAATATTTACCTGGCGGCGACATTATGACACTGTTAATGAGAGAAGATATTCTTTCTGAAAATGTTGCTCGCTTCTACATTGCTGAAAGTATTCTTGCTATCCATTCAATACATCAACACAACTATGTACATAGGGATATAAAGCCAGATAACCTTATACTGGATAAAAATGGTCATTTGAAGCTTTCAGACTTCGGCTTATGTAAGACTCTTGATGACAAGTATTCAACAATTTTATTAGAAAATGAAGATTTTAACGGTCAAGAATCAACTAGTGAAACTGAAGGATATTTTGTCTCCCCTTGGTTGATGCCAAAGGAAAAATTACAGCAGTGGAAACGTAATCGCCGTGCATTGGCATATTCAACTGTTGGAACTCTTGACTACATGGCTCCTGAAGTTTTGCTCAAGAAGGGGTATGGAATAGAGTGTGATTGGTGGTCTCTTGGGGCAATCTTGTATGAGATGCTTGTTGGATATCCTCCATTTTGTTCTGATGATCCAAGGATGACCTGCCGGAAGATTGTGAATTGGAAAGCATGCCTGAAATTCCCCGAAGAACCCAAGATATCAGCTGAAGCTAAGGATCTCATCTGTAGCTTATTATGTGATGTTGACACGAGACTAGGAACGAGGGGAGTAGACGAAATAAAGGCTCATCCATGGTTCAAGGGTATTCAGTGGGACATGCTTTATGAATCGGAGGCTGCATATAAACCTACAGTCATTGGAGACTTGGACACACAAAACTTCGAGAAGTTTCCTGATGTAGGACCACCATCCGTAACTGAAACAATGGGACCTTGGAGAAAGATGTTGACATCCAAAGACACTAATTTCATAGGATACACTTATAAGAAATCAGACATCCTTAAATCAATTGGAGCTACAGATGAAGATATCAGAGTAAATGGATCATCAAAATCACCCTCTTTGATTTCTTTGTTAGGGCAAATGGATTTGCAAGATGTCGTCATTACAGAAAATGAACAGAAGCCAGAAACTTGA	1563	0.4082	MDGYDGTVRLGAINMKYDRGDFDSGADVSVSSPVTKQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRRVQESQLPVEEQEVMMRNLERKETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRGKSSGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSENVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKTLDDKYSTILLENEDFNGQESTSETEGYFVSPWLMPKEKLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAILYEMLVGYPPFCSDDPRMTCRKIVNWKACLKFPEEPKISAEAKDLICSLLCDVDTRLGTRGVDEIKAHPWFKGIQWDMLYESEAAYKPTVIGDLDTQNFEKFPDVGPPSVTETMGPWRKMLTSKDTNFIGYTYKKSDILKSIGATDEDIRVNGSSKSPSLISLLGQMDLQDVVITENEQKPET*	521

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa6g0295	520	Coils	Coil	78	101	-	-
Psa6g0295	520	Gene3D	Phosphorylase Kinase; domain 1	427	437	-	-
Psa6g0295	520	SUPERFAMILY	Protein kinase-like (PK-like)	83	457	IPR011009	-
Psa6g0295	520	Pfam	Protein kinase domain	108	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Psa6g0295	520	CDD	STKc_NDR_like	106	471	-	-
Psa6g0295	520	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
Psa6g0295	520	Gene3D	Phosphorylase Kinase; domain 1	78	191	-	-
Psa6g0295	520	Gene3D	Transferase(Phosphotransferase) domain 1	307	426	-	-
Psa6g0295	520	ProSitePatterns	Protein kinases ATP-binding region signature.	114	137	IPR017441	GO:0005524
Psa6g0295	520	SMART	serkin_6	108	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g0295	Psa-Chr6	8866253	8874479	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g0295	1	508	AGC Kinase Gene Family	AT5G09890	76.953	0.0	815

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Psa6g0295		Pkinase	1.9e-64	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g0295	K08790		-	gmx:100781770	936.406

Showing 1 to 1 of 1 entries

Previous1Next