Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0279 ATGAAGGCTCTCAATTCTCGTTCTGGTAAAGATTTCATGCCAACCGATGATGAACTTCTTCAAAACTTTCTCTACAACAAAATTAACAATAAACCAATTCCCAATTATCTCAACATTCTCGAACATGATTTGTTCGGAACTGAAAAGACTCCTTTGGATATATGGAACGAGTTCGAAGCTTCCTACTCATATGGCGGAAAAGACCTGTACTTCTTTACTGCCTTAAAGAAGAAGTCGGCTACGAGCACGCGCTCCGTTCGCACTATCGGAAACGGTAATTGGGAAGGTGAAGACACCGGAAAAAGTATATTTGCCAAAGACACACACAAACTTCTGGGAATGAAAAAACGTTTTCGTTTTGAGAAGAGTAACACTCCTCAAGACGGTGGATGGATCTTGCACGAATATAACCTCCATAAATCTTTGATTAACAATCCTTCTCCGGTCAATAATTATGTACTATGCAGATTTAGAAAGAATTTGAAACCAGAATCACAGAATACACCAGCAAAAGCAAGTATAGCTGATGAATCCAATTCTCATTTAAGAAAAAATTCAACAACAAAAAGTTGTTATAGTCAAACAAAAAGTTGTTATGGTCAAGAGAGTAAAGGAAAGACTGTGATGCTTCCTAAACAACAAGAACCTATCATTCCTAAACAAGAAGAACCACCTGCAGTTATATCAGGCAATAATGTTTTGGTGAAAAAATATATTATTTATGAAAAAGCACCAATTCAACCGAATGATGGTGGAAACAAGAGGAAATATGAGGATGATATAGAGTTTGTATACAAAGGAGTAAAAAGAAAATGCATCAGAAGTACTTGGCTTGAAGAGAAAAGATATCTTGCACTAAAGACTGTCTTTGAATATGAGTACAATAAGCTATTTTTTGGAGAAAATATTGACCAAAATTCAAAAAATGGAGTTGATAGTAGAAATTACAAAACTGAGGTGGTTGAATGTAGCAATAACAAAACTGAAGTGGGTGAATGTAGCAATCAAAAAGAGTGCAACTTTAACAAAGAAGATGACAGTGATATCATCATGAACAACGAAGAAGAAGAAGATGAGATGTCTTGGCCTGAATTTTTCGCAAAGCAACTGCTGGAAATTAATGGAGGAGAAGGGTTTATAAAAGAGAAGGATGTTCAAATGATTGACAATAGTTTTCTTAAAGACTTTTTTCTGGGAAATAACATTATGTAA 1212 0.3507 MKALNSRSGKDFMPTDDELLQNFLYNKINNKPIPNYLNILEHDLFGTEKTPLDIWNEFEASYSYGGKDLYFFTALKKKSATSTRSVRTIGNGNWEGEDTGKSIFAKDTHKLLGMKKRFRFEKSNTPQDGGWILHEYNLHKSLINNPSPVNNYVLCRFRKNLKPESQNTPAKASIADESNSHLRKNSTTKSCYSQTKSCYGQESKGKTVMLPKQQEPIIPKQEEPPAVISGNNVLVKKYIIYEKAPIQPNDGGNKRKYEDDIEFVYKGVKRKCIRSTWLEEKRYLALKTVFEYEYNKLFFGENIDQNSKNGVDSRNYKTEVVECSNNKTEVGECSNQKECNFNKEDDSDIIMNNEEEEDEMSWPEFFAKQLLEINGGEGFIKEKDVQMIDNSFLKDFFLGNNIM* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0279 403 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Psa6g0279 403 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
Psa6g0279 403 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Psa6g0279 403 MobiDBLite consensus disorder prediction 165 188 - -
Psa6g0279 403 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
Psa6g0279 403 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 9 354 - -
Psa6g0279 403 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0279 Psa-Chr6 8555697 8557231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0279 9 157 NAC Transcription Factor Family AT5G13180 31.788 3.80e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa6g0279 NAM 8.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0279 - - cam:101507022 285.419