Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0275 ATGGGAGGAAGAGAAGAAGGGTGCAGATCTTGGGAGGAAGACGTTTACTGGACCCATTTTCAATTCATCCATTTCACCCAATTTCTCCGCACTGATTTTGATCAACATCTTGCACTTCCCAAAACATTTTCAGACAATATAAAGAAAAAGTTGCCAGAAAGTGTGACCCTAAAAGGTCCTGGTGGAGTGCTGTGGAATATAGAGCTGACAACTAGAGACGGTACCTTGTACTTCACGAACGGTTGGCAACAATTTGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTAGTTTCTGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAAAGTCGGCATGCCGTCAATACTGAACACGGGGGTGGATGTTCTAGCAAGAAAAGGGACACAGATAATTCCGTTGAAGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTCGCATCTTAACAAAATCCGAGTGCCATTTGCCGTACCTATTGAAACTACTAATGGAAAGACTTCGAATGCTGGTGTTGAATCTGCCACCGCCGAGCAATTCATGTCTGATGTAATCACTGATGCTGAGCCAATAACTGTTCCCTCCCAAACAACTGGTAAACGGATAAGGAAGCCTGTTTATGCCGATACGTCTGTCCCAAGTAAGAAGAGAGGAAGACCACCAAAAACAGCTAATTCTCACGAGAGAGCTCTTAATTGGGTGTCTGATGCTGAACATTCTCCAAAGGTTTCTCCAAAGGCCTCTCCAAAGGTTAAATCTGTGACACAGGAACTATATACTTCAAATAGAAGGCCTGTCACACAAAATGAGATTGAAGACACTCTTCGGTTGGCCCAGGCAACTAGTACCGAAGACACCTTGCTTGTAACTATGCGACCTTCGCATGTATACAAGAGATTCTTTGTGTCATTCCCTAATAAGTGGATACTAAACCATCTTTCACCGTCATCTCAAGATGTGATATTACGCATGGGTAGGGGTGAATGGGTTGGGAAATACTGCTATCACAATATTCGTAACAATGGAGGACTTACCGGCGGGTGGAAATATTTTGCGCTTGAGAATAACCTCGAAGAGTTTGATGTGTGTTTGTTTAAGCCTGGTGGTTATATGCAAAACACATTGATCTTAGAAATGACCGTTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGCATTCTTCGGGAAAGAGGAGATCAATTAAGAAAACACCATCCGGTGAACCATTATTAAAGAAGAGGGGAGTTATGATAACCCCAATCAGGGCTGTCCAAACAGAACTTGACTCCATTGAAGACATGAATGTGCATACCCCTCAAGATTTGAACCTTGTTAAGCTGAAAGATCTGGTTGGTAATGATGGGGATTGGAACTGGCAGCTTCTGGATCAGTGGTTACCTCAGCCAAATATCAAGTATGGGAGGGATGAGTTAGTACAGGAACTGGAAACAATAAATGTATTCGAGTTTGGTTAG 1503 0.4232 MGGREEGCRSWEEDVYWTHFQFIHFTQFLRTDFDQHLALPKTFSDNIKKKLPESVTLKGPGGVLWNIELTTRDGTLYFTNGWQQFVKEHSLKENDFLSFCEKAACYFVRKSRHAVNTEHGGGCSSKKRDTDNSVEEVNTPSNGVDEGVSPEKSSHLNKIRVPFAVPIETTNGKTSNAGVESATAEQFMSDVITDAEPITVPSQTTGKRIRKPVYADTSVPSKKRGRPPKTANSHERALNWVSDAEHSPKVSPKASPKVKSVTQELYTSNRRPVTQNEIEDTLRLAQATSTEDTLLVTMRPSHVYKRFFVSFPNKWILNHLSPSSQDVILRMGRGEWVGKYCYHNIRNNGGLTGGWKYFALENNLEEFDVCLFKPGGYMQNTLILEMTVFRVVEEITPLTAVHSSGKRRSIKKTPSGEPLLKKRGVMITPIRAVQTELDSIEDMNVHTPQDLNLVKLKDLVGNDGDWNWQLLDQWLPQPNIKYGRDELVQELETINVFEFG* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0275 500 MobiDBLite consensus disorder prediction 201 259 - -
Psa6g0275 500 CDD B3_DNA 297 390 IPR003340 GO:0003677
Psa6g0275 500 SUPERFAMILY DNA-binding pseudobarrel domain 21 100 IPR015300 -
Psa6g0275 500 Gene3D - 18 114 IPR015300 -
Psa6g0275 500 SMART B3_2 294 392 IPR003340 GO:0003677
Psa6g0275 500 SMART B3_2 25 114 IPR003340 GO:0003677
Psa6g0275 500 SUPERFAMILY DNA-binding pseudobarrel domain 295 381 IPR015300 -
Psa6g0275 500 Gene3D - 273 394 IPR015300 -
Psa6g0275 500 CDD B3_DNA 24 99 IPR003340 GO:0003677
Psa6g0275 500 ProSiteProfiles B3 DNA-binding domain profile. 294 392 IPR003340 GO:0003677
Psa6g0275 500 MobiDBLite consensus disorder prediction 118 134 - -
Psa6g0275 500 Pfam B3 DNA binding domain 36 100 IPR003340 GO:0003677
Psa6g0275 500 Pfam B3 DNA binding domain 296 382 IPR003340 GO:0003677
Psa6g0275 500 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 262 400 - -
Psa6g0275 500 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 169 - -
Psa6g0275 500 MobiDBLite consensus disorder prediction 118 157 - -
Psa6g0275 500 ProSiteProfiles B3 DNA-binding domain profile. 22 112 IPR003340 GO:0003677
Psa6g0275 500 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 262 400 IPR044837 -
Psa6g0275 500 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 169 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0275 Psa-Chr6 8415957 8420514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0275 6 390 REM Transcription Factor Family AT4G33280 30.918 7.95e-50 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g0275 B3 4.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0275 - - mtr:MTR_1g021500 640.188