LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g0275	ATGGGAGGAAGAGAAGAAGGGTGCAGATCTTGGGAGGAAGACGTTTACTGGACCCATTTTCAATTCATCCATTTCACCCAATTTCTCCGCACTGATTTTGATCAACATCTTGCACTTCCCAAAACATTTTCAGACAATATAAAGAAAAAGTTGCCAGAAAGTGTGACCCTAAAAGGTCCTGGTGGAGTGCTGTGGAATATAGAGCTGACAACTAGAGACGGTACCTTGTACTTCACGAACGGTTGGCAACAATTTGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTAGTTTCTGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAAAGTCGGCATGCCGTCAATACTGAACACGGGGGTGGATGTTCTAGCAAGAAAAGGGACACAGATAATTCCGTTGAAGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTCGCATCTTAACAAAATCCGAGTGCCATTTGCCGTACCTATTGAAACTACTAATGGAAAGACTTCGAATGCTGGTGTTGAATCTGCCACCGCCGAGCAATTCATGTCTGATGTAATCACTGATGCTGAGCCAATAACTGTTCCCTCCCAAACAACTGGTAAACGGATAAGGAAGCCTGTTTATGCCGATACGTCTGTCCCAAGTAAGAAGAGAGGAAGACCACCAAAAACAGCTAATTCTCACGAGAGAGCTCTTAATTGGGTGTCTGATGCTGAACATTCTCCAAAGGTTTCTCCAAAGGCCTCTCCAAAGGTTAAATCTGTGACACAGGAACTATATACTTCAAATAGAAGGCCTGTCACACAAAATGAGATTGAAGACACTCTTCGGTTGGCCCAGGCAACTAGTACCGAAGACACCTTGCTTGTAACTATGCGACCTTCGCATGTATACAAGAGATTCTTTGTGTCATTCCCTAATAAGTGGATACTAAACCATCTTTCACCGTCATCTCAAGATGTGATATTACGCATGGGTAGGGGTGAATGGGTTGGGAAATACTGCTATCACAATATTCGTAACAATGGAGGACTTACCGGCGGGTGGAAATATTTTGCGCTTGAGAATAACCTCGAAGAGTTTGATGTGTGTTTGTTTAAGCCTGGTGGTTATATGCAAAACACATTGATCTTAGAAATGACCGTTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGCATTCTTCGGGAAAGAGGAGATCAATTAAGAAAACACCATCCGGTGAACCATTATTAAAGAAGAGGGGAGTTATGATAACCCCAATCAGGGCTGTCCAAACAGAACTTGACTCCATTGAAGACATGAATGTGCATACCCCTCAAGATTTGAACCTTGTTAAGCTGAAAGATCTGGTTGGTAATGATGGGGATTGGAACTGGCAGCTTCTGGATCAGTGGTTACCTCAGCCAAATATCAAGTATGGGAGGGATGAGTTAGTACAGGAACTGGAAACAATAAATGTATTCGAGTTTGGTTAG	1503	0.4232	MGGREEGCRSWEEDVYWTHFQFIHFTQFLRTDFDQHLALPKTFSDNIKKKLPESVTLKGPGGVLWNIELTTRDGTLYFTNGWQQFVKEHSLKENDFLSFCEKAACYFVRKSRHAVNTEHGGGCSSKKRDTDNSVEEVNTPSNGVDEGVSPEKSSHLNKIRVPFAVPIETTNGKTSNAGVESATAEQFMSDVITDAEPITVPSQTTGKRIRKPVYADTSVPSKKRGRPPKTANSHERALNWVSDAEHSPKVSPKASPKVKSVTQELYTSNRRPVTQNEIEDTLRLAQATSTEDTLLVTMRPSHVYKRFFVSFPNKWILNHLSPSSQDVILRMGRGEWVGKYCYHNIRNNGGLTGGWKYFALENNLEEFDVCLFKPGGYMQNTLILEMTVFRVVEEITPLTAVHSSGKRRSIKKTPSGEPLLKKRGVMITPIRAVQTELDSIEDMNVHTPQDLNLVKLKDLVGNDGDWNWQLLDQWLPQPNIKYGRDELVQELETINVFEFG*	501

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa6g0275	500	MobiDBLite	consensus disorder prediction	201	259	-	-
Psa6g0275	500	CDD	B3_DNA	297	390	IPR003340	GO:0003677
Psa6g0275	500	SUPERFAMILY	DNA-binding pseudobarrel domain	21	100	IPR015300	-
Psa6g0275	500	Gene3D	-	18	114	IPR015300	-
Psa6g0275	500	SMART	B3_2	294	392	IPR003340	GO:0003677
Psa6g0275	500	SMART	B3_2	25	114	IPR003340	GO:0003677
Psa6g0275	500	SUPERFAMILY	DNA-binding pseudobarrel domain	295	381	IPR015300	-
Psa6g0275	500	Gene3D	-	273	394	IPR015300	-
Psa6g0275	500	CDD	B3_DNA	24	99	IPR003340	GO:0003677
Psa6g0275	500	ProSiteProfiles	B3 DNA-binding domain profile.	294	392	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g0275	Psa-Chr6	8415957	8420514	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g0275	6	390	REM Transcription Factor Family	AT4G33280	30.918	7.95e-50	174

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Psa6g0275		B3	4.9e-09	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g0275	-		-	mtr:MTR_1g021500	640.188

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