Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0274 ATGGCCGGTGAAGGACAAAGCGGCAACCACTTCAAATCATGGCAGGAAGAGATTTACTGGACCCATTTCCAGTTCATCCATTTCACTCAATTTCTTCACAACGATTTTCAGCAACAACTTGCACTTCCCAAAACATTTTCAGACAACTTAAAGAAGAAGTTGCCGGAAAATGTTACCCTTAAAGGTCCTAGTGGAGTTTTGTGGAATATAGGGCTGGTAATTAGAGATGATTCTGTTTACTTCGAGAACGGTTGGGAACGATTTGTGAAGGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAGTCTTTGATGGAAACAGTTTCTGTGAGAAGGCAACTTCTTACTTTGTTGGCAAATGCGGACCTGCTCAAGCTGAACAAGGTGGTACCAAGGCAAAGGACAACAACAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGGTGGTGTTGAATGTGGTTCCTCTGAGAAATTTCGGCGTCTTAAGAAAGTAGGAACGCCATTAGCTGTACCTTTTGAAACTGCCAATGGAAAGACTTCCAATGCTGGTGTAAGAACTGATTCCCCTGAACTGTTCCCGGCAGATGCAGTCACTAAGACTACACCTCTAGTAGTTCCCTTCCAATCAGCTGGAAAAAGGATCAAGAAGCCTGTTAATGAAATTTCGCCTGGCCCTACTAAGAAGCGAGGAAGACCACCAAAAGTCGATAATTCTTCTGAGACAATACGCGATTTGGTGGCTTATAGCAAGGAACATTCAGATAGCAAGGGAAAAGATGTTGATGCTTATGATGAAATTCAAGGAGGAACCTGA 849 0.4193 MAGEGQSGNHFKSWQEEIYWTHFQFIHFTQFLHNDFQQQLALPKTFSDNLKKKLPENVTLKGPSGVLWNIGLVIRDDSVYFENGWERFVKDHSLKENDFLVFKYNGESLFEVLVFDGNSFCEKATSYFVGKCGPAQAEQGGTKAKDNNNSVEEVNTASNGGVECGSSEKFRRLKKVGTPLAVPFETANGKTSNAGVRTDSPELFPADAVTKTTPLVVPFQSAGKRIKKPVNEISPGPTKKRGRPPKVDNSSETIRDLVAYSKEHSDSKGKDVDAYDEIQGGT* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0274 282 MobiDBLite consensus disorder prediction 226 282 - -
Psa6g0274 282 Gene3D - 21 121 IPR015300 -
Psa6g0274 282 CDD B3_DNA 27 116 IPR003340 GO:0003677
Psa6g0274 282 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 9 188 - -
Psa6g0274 282 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Psa6g0274 282 Pfam B3 DNA binding domain 32 116 IPR003340 GO:0003677
Psa6g0274 282 SMART B3_2 25 118 IPR003340 GO:0003677
Psa6g0274 282 MobiDBLite consensus disorder prediction 257 275 - -
Psa6g0274 282 SUPERFAMILY DNA-binding pseudobarrel domain 24 118 IPR015300 -
Psa6g0274 282 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 188 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0274 Psa-Chr6 8388206 8402019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0274 14 140 REM Transcription Factor Family AT4G33280 57.812 1.32e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g0274 B3 7.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0274 - - mtr:MTR_1g021440 343.969