Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0273 ATGGAAGGAGGAGGAGGACAAAGCGGCAACCACTTCAAATCATGGCAGGAAGAGATTTACTGGACCCATTTCCAGTTCATCCATTTCACTCAATTTCTTCACAACGATTTTCAGCAACAACTTGCACTTCCTAAAACATTTTCAAAGAATGTAAAGAAGAAGTTGTCAGAAAATGTGACCATCAAAGGTCATAGTGGAGTTGTGTATAATGTAGGGTTGACAACTAGAGACGATACTGTGTACTTCACGAATGGTTGGCAGCAATTCGTGAAAGACCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTAAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTTTGCGAGAAAGCAGCTTCTTATTTTGTCGGAAAATACGGACATGCTCAAACAGAACAAGGGGGTGATGACAAGGCAAAGGAAACAAACAATTCTGTTGAAGAAGCCAATATGGCTTCTAATGGTGGTGTTGAATGTGGTTTGCATGAGAAATTTCGGTATCTTAACAATATAAGAACACCATTAGCCGCACCTTTTGAAACTACCAATGAAAAGTCTTCTAGTGCTGGTGTTGAATTTGCTTCACCTGAGCAGGTCACGGCTGATGCAGTCACTAAGTCCGCATCAGCAGCGTTTCCCTCCCAACCAACGGGTAAAAGAACCAAGAGGTCTGATAATGAGGCTACAGCTGTCCAGAATAACCGGCGAGGAACATCACCAATAGCAGGTTGGAAAACTAACTTTTTTAGTATGCTTAGCGCAAAACACTGTGTCGCTTGCCATGAGACGTCTAAAGATATGCCAATGAATCCTATAGTCAGCTCAAAACCCAAAGACAAAGCTGATCCATCGGATAAAAAATTGTCAAAGATTAGTCAAGAAGCTGTTTTATCCACCGACTTGAAGAAATCTGGTGGAACTTCAATTACTTTGAAGAAGATTGCTCAAGAAGCTGTTTTATCCACTAACTTGAAGAAATCGGGCGGAGCTTCAAATACTTTGAAAAAGATTGGTCAAGAAGCTGTTTTATCCACCGACTTGAAGACACCTGGTGGAGCTTCAAATACTCCGAAGAAGATGGGGATTTGCTCCATGTCGAAAACTGCCCATAAAAAGTTGGCTACACCGAAGAGGCATCGTGTTGAAGATGAACTAAGCTCCGAGGCTAAAGCTGATTTGAAAATGTTGGCTTCACTCGAAAAACAAAAAGCAGCTGAAGCTCTTAAATCCCCATTTCCTAATTTTGTGACAATCATGAAGAAGTTAAATGTCAGTGGATCACGGACTTTGAGAATCCCACAAGAGTTCGCTTCTGCACATCTCCCCGACTACAAAACAGAAATTACGCTTCGCAATTCAAGAGGCGAATGTTGGACAGTGAACTCCATCCCAGATAGTAAAGGGGGAAAAGCTCACACCTTGTGTGGGGGATGGATGTATTTTGTTCGTGCTAATGGCATAAATGTTGGCGACACGTGCATTTTTGAGCTTGTTTCTCATCTTGTCATACAGGTTCATATATTTGGAGTTGGAAAGGAAGGTCTTGACCATCAAAATGGGAATGTGAAACCTAATGATGCTCCATCTACCTGCTAA 1617 0.4137 MEGGGGQSGNHFKSWQEEIYWTHFQFIHFTQFLHNDFQQQLALPKTFSKNVKKKLSENVTIKGHSGVVYNVGLTTRDDTVYFTNGWQQFVKDHSLKENDFLVFKYNGKSHFEVLIFDGESFCEKAASYFVGKYGHAQTEQGGDDKAKETNNSVEEANMASNGGVECGLHEKFRYLNNIRTPLAAPFETTNEKSSSAGVEFASPEQVTADAVTKSASAAFPSQPTGKRTKRSDNEATAVQNNRRGTSPIAGWKTNFFSMLSAKHCVACHETSKDMPMNPIVSSKPKDKADPSDKKLSKISQEAVLSTDLKKSGGTSITLKKIAQEAVLSTNLKKSGGASNTLKKIGQEAVLSTDLKTPGGASNTPKKMGICSMSKTAHKKLATPKRHRVEDELSSEAKADLKMLASLEKQKAAEALKSPFPNFVTIMKKLNVSGSRTLRIPQEFASAHLPDYKTEITLRNSRGECWTVNSIPDSKGGKAHTLCGGWMYFVRANGINVGDTCIFELVSHLVIQVHIFGVGKEGLDHQNGNVKPNDAPSTC* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0273 538 Gene3D - 404 518 IPR015300 -
Psa6g0273 538 ProSiteProfiles B3 DNA-binding domain profile. 422 518 IPR003340 GO:0003677
Psa6g0273 538 SUPERFAMILY DNA-binding pseudobarrel domain 25 117 IPR015300 -
Psa6g0273 538 CDD B3_DNA 420 515 IPR003340 GO:0003677
Psa6g0273 538 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 13 530 - -
Psa6g0273 538 MobiDBLite consensus disorder prediction 209 244 - -
Psa6g0273 538 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 530 IPR044837 -
Psa6g0273 538 Gene3D - 22 122 IPR015300 -
Psa6g0273 538 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Psa6g0273 538 MobiDBLite consensus disorder prediction 275 296 - -
Psa6g0273 538 MobiDBLite consensus disorder prediction 209 226 - -
Psa6g0273 538 Pfam B3 DNA binding domain 422 513 IPR003340 GO:0003677
Psa6g0273 538 Pfam B3 DNA binding domain 33 117 IPR003340 GO:0003677
Psa6g0273 538 CDD B3_DNA 28 117 IPR003340 GO:0003677
Psa6g0273 538 SMART B3_2 422 518 IPR003340 GO:0003677
Psa6g0273 538 SMART B3_2 26 119 IPR003340 GO:0003677
Psa6g0273 538 SUPERFAMILY DNA-binding pseudobarrel domain 415 517 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0273 Psa-Chr6 8334640 8339595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0273 15 144 REM Transcription Factor Family AT4G33280 55.725 4.29e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g0273 B3 4.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0273 - - mtr:MTR_1g021320 426.787