Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0272 ATGGCTTGTAAGTGTAAGGGAAGCTTAAATGTGAGAAAACCTCACTTCTATGAGGTGTATTCATCTTCTTCTAGCTTTGAAACCCTGAAAATTCCAAATGGTTTCGTATGTCAAATGGAAGGCAGGACATGTGGATTAGTTTCATTAACTGGTCCTAGTGGAAATACTTGGCAAGTTCGATTAGTTGAGCAGGGCAATTATCTATTCTTCCATCATGGATGGTCAACATTTACGGAAGATCATCATTTAGAATATGGTGACCTTTTGGTTTTCAGATACGAGGGTGACTTGCATTTCACCGTGCAAGTATTTGGCAAGAATGCGTGCGAGAAAGAAGCAGCATTTAATTCTGAGTGCAATCTAAATTCATTCAACTTAGATAATATTGAAGGACTAAAAAGGGATGCCGAGGAGATTTATTCTTTGGATGTTGTTGGAGGTGTTCAGAAGAAAATGAGGCGTGACACAGTTGAGAACCAGGAACTTGGGTTGGCTATTGTTGGTAGAGAACTACCCCAGGGTGAGGTAATTAAACCAATTCGAATGATCAGAGAAACAGAAGAAACCTACGGAGAATGTTCTGCTAGTGCTGTTCCTTTTCACACAAAAACTAGTAATGAAGATGAAGCCATTCTCAGTGGAGCTTCATTGTCAAAGCTATCAGCACACGATGAGAAAAAGATAGCCCAGTCATTTACCTCCTCTTTTCCATATTTTGTTAAAATAATTAAAACCTTCAATGTCAGTGGTTCATATACTCTGAATATACCATATCAGTTTTCGATGGCACATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACACTGGACCGTTAATTCTGTTCCAACAACTAGGGTGCATACAAGTCACACTATGTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAGTATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACGTGAGTGTGAATTACGTGTTCGCATTGCTGAGGTTGGAAAAGATGGGTTAGACTGCCAAGTTGGAAAACTAGCTTTTAGTATGCTTAGGGCAAGACACGATGTCGCTTGCAGAAAGACTGCCAAATATATGTCAAAAAGCCCTAAAGTCAGCCCAAAGTCGAGAAACAAAGTTGATCTATCAGATAAAAGGTTGTCAAAGATGGGTCAAGAAACTGTTTTATCCGGTAGAGCTTCAAATACTTCGAAGATCGGGGTTTGCCCCAAGTCAAAACCTGCCAAGAAAAAGTTGGCTGTACCGCGGAAACATAGTGTTGAAGATGAACTAAGCTCCCAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTTGACGAACAAAGAGTGGCTGAAGCTTTTACTTCGGACTTTCCTAATTTTGTGAAAATCATGAAGATGTTCAATGTCAGCGGATCATACACTTTGAAAATTCCATATCAGTTCTCTGCTGCACATCTTCCTGCCGACAAAACAGAAGTTACTCTTCGCAATTCAAGAGGCCAATGTTGGACCGTGAACTCCGTTCCAGATGCTAATGGGAGAACAATTCACACCTTTTGTGGAGGATGGATGGCTTTTGTTCGTGATAATGACATAAATTTTGGCGACACATGCATATTTGAGCTGGTTTCTCATTATGTGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGTCTTGACCATCAAAATGGTGGGCATGTGAAACTTACTAACTAG 1722 0.4013 MACKCKGSLNVRKPHFYEVYSSSSSFETLKIPNGFVCQMEGRTCGLVSLTGPSGNTWQVRLVEQGNYLFFHHGWSTFTEDHHLEYGDLLVFRYEGDLHFTVQVFGKNACEKEAAFNSECNLNSFNLDNIEGLKRDAEEIYSLDVVGGVQKKMRRDTVENQELGLAIVGRELPQGEVIKPIRMIRETEETYGECSASAVPFHTKTSNEDEAILSGASLSKLSAHDEKKIAQSFTSSFPYFVKIIKTFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTMCGGWMAFVRGNSIKVGDVCIFELIRECELRVRIAEVGKDGLDCQVGKLAFSMLRARHDVACRKTAKYMSKSPKVSPKSRNKVDLSDKRLSKMGQETVLSGRASNTSKIGVCPKSKPAKKKLAVPRKHSVEDELSSQAKAGLRMLFALDEQRVAEAFTSDFPNFVKIMKMFNVSGSYTLKIPYQFSAAHLPADKTEVTLRNSRGQCWTVNSVPDANGRTIHTFCGGWMAFVRDNDINFGDTCIFELVSHYVMQVYISGVGKEGLDHQNGGHVKLTN* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0272 573 Gene3D - 446 556 IPR015300 -
Psa6g0272 573 Gene3D - 220 335 IPR015300 -
Psa6g0272 573 SUPERFAMILY DNA-binding pseudobarrel domain 454 555 IPR015300 -
Psa6g0272 573 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 435 - -
Psa6g0272 573 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 436 566 - -
Psa6g0272 573 CDD B3_DNA 14 104 IPR003340 GO:0003677
Psa6g0272 573 CDD B3_DNA 237 331 IPR003340 GO:0003677
Psa6g0272 573 ProSiteProfiles B3 DNA-binding domain profile. 239 335 IPR003340 GO:0003677
Psa6g0272 573 ProSiteProfiles B3 DNA-binding domain profile. 461 557 IPR003340 GO:0003677
Psa6g0272 573 Gene3D - 8 109 IPR015300 -
Psa6g0272 573 PANTHER B3 DOMAIN-CONTAINING 1 435 - -
Psa6g0272 573 PANTHER B3 DOMAIN-CONTAINING 436 566 - -
Psa6g0272 573 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Psa6g0272 573 Pfam B3 DNA binding domain 461 546 IPR003340 GO:0003677
Psa6g0272 573 Pfam B3 DNA binding domain 239 331 IPR003340 GO:0003677
Psa6g0272 573 SUPERFAMILY DNA-binding pseudobarrel domain 22 112 IPR015300 -
Psa6g0272 573 SUPERFAMILY DNA-binding pseudobarrel domain 232 332 IPR015300 -
Psa6g0272 573 SMART B3_2 16 107 IPR003340 GO:0003677
Psa6g0272 573 SMART B3_2 461 557 IPR003340 GO:0003677
Psa6g0272 573 SMART B3_2 239 335 IPR003340 GO:0003677
Psa6g0272 573 CDD B3_DNA 459 552 IPR003340 GO:0003677
Psa6g0272 573 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0272 Psa-Chr6 8262923 8267475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0272 237 551 B3 DNA Binding Superfamily AT3G18990 21.893 2.20e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g0272 B3 4.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0272 - - gmx:100814386 830.476