Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0270 ATGTCAAGTAGTAGGGATACTCATTGGTGCTATAATTGCATGAAATCGGTTCGATTGGGACGGAGACATGCAGTTTGCTCTGGTTGTGATGGGGGATTTGTTCAAGATCTTGATGATATGGTTCATGGTAGCCCTCCAGACTTTCATGGAGTGGACAGCGATGAAGAGCTTGGACAAAGGTTTTCTAGACAAGGTGGCATTGAAGCTCTCTTAAACGGAACTCCCGGAGTTGGTGTGACTAGAGATAACTCAGGCGACTATTTTATCGGCCCTGGAGTTACAGAACTGTTTGAACAGCTTTCGGCTAATGACCAGCGAGGTCCCCCGCCTGCATCGAGATCCTCTATAGCTGCAATCCCTACTGTCAAGATTGCGTCGAAGCATCTTCAGTCAGATCCATCATGTCCTGTATGCCAAGATGACTTTGAGCTGGGGTCTGAAGCAAAACAAATGCCATGTAAGCATATGTTTCACTCAGACTGTATTGTACCGTGGTTGGTTCAGCATAACACCTGCCCTGTTTGCCGACAAGAATTGCCACCACAGGGATCGAGCGGTAACCGTAGCTCAAGTAGAAGCAGTGGAAGAAGGAGAAATCCTTTTTCCTTTTTGTGGCCTTTTGGCTCTTCTAATTCTAGAAGTAACGATAGAGCAACGGAATGA 663 0.4646 MSSSRDTHWCYNCMKSVRLGRRHAVCSGCDGGFVQDLDDMVHGSPPDFHGVDSDEELGQRFSRQGGIEALLNGTPGVGVTRDNSGDYFIGPGVTELFEQLSANDQRGPPPASRSSIAAIPTVKIASKHLQSDPSCPVCQDDFELGSEAKQMPCKHMFHSDCIVPWLVQHNTCPVCRQELPPQGSSGNRSSSRSSGRRRNPFSFLWPFGSSNSRSNDRATE* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0270 220 Pfam Ring finger domain 134 176 IPR001841 -
Psa6g0270 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 56 - -
Psa6g0270 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 68 203 - -
Psa6g0270 220 SUPERFAMILY RING/U-box 116 182 - -
Psa6g0270 220 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Psa6g0270 220 MobiDBLite consensus disorder prediction 180 205 - -
Psa6g0270 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 182 IPR013083 -
Psa6g0270 220 CDD RING-H2_RNF126_like 134 176 - -
Psa6g0270 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 56 - -
Psa6g0270 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 68 203 - -
Psa6g0270 220 SMART ring_2 135 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0270 Psa-Chr6 8225752 8228091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0270 83 180 C3H Transcription Factor Family AT5G01980 48.000 7.19e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0270 K11982 - mtr:MTR_1g051105 335.109