Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0259 ATGAAGAAAAATAACTTCGCCATGAATCATGTTGTGCTTAACTTCATTTTCTTCATACTAAGTGTTTTTCTTTCATTGAAAACCAATGCACAACAGAATTACTCAGGAAATTCGATATTCACCTGCAAGAACAGCGATGATACGGGACCTTCGCCCGCGTTTCTTTACACCTGCAATGGCTTCAACAAATCATGCATGGCTTTTCTGAGCTTCAGAACCAAACCTCCTTATAACTCCGTCAACTCGATTTCCAACCTCACGTCATCAAACCCGAAAGAGCTCGCCCGAGTCAATGGCGCCACTTTGCTCACAGTTTTCCCACCTGGCAAAGAGGTTATTGTTCCTGTGAACTGTTCTTGTTTAACCAATGATTATTATCAAGCTGAAACCAAATATATATTGGGTCCACACCCGACATATTTCATAGTAGCAAACGACACGTTCCAGGGTTTGACAACGTGTGATTCTCTGATGCGTGTGAATCCATACGGGGAACTTGATTTGTATCCAAGAATGGAGTTACAGGTTCCGCTTCGATGCGCTTGTCCAACGTATCATCAGAAAACAAATGGCACCAAGTATTTACTCACATACTCAGTAACCTGGGGGGATAACATTTCAAATATTGCTACAAGGTTCAATGTAACAGAAGGTAATCTAGTTGATGCTAATGGTTTTTCCACACAGACTCAAGTACTTTATCCATTCACAACTGTTCTGATTCCTTTTCCAAGTGAACCAAGGAGTCCAACAACCATAGTTGCCAATGATCCACCAACTCCTGGTGGTTGCAGCTTTAAAAAGTGCAAGTCAACGAGAAAAACACTCCACATTGCTTTAACCACCTCGGTGCCAGTTCTGTGTGTCTTCTTGTTTGTGCTGATTCTGTTTTTGCTAAGAAAGAGAGCAGCAGGGTTGTTTAAGCGACGTGCGCGAGGTAAGAAAAAAACGGGGGTGTTTTCAGAAGTGATCCGTGAGGAGATAGCGATCATTGAACATCTCTCCAAAGTGTATAGGTTTGAGGAAATAAAAGAGGCAACTGAGAATTTTAGTTCAAAGAATAGAATCAAAGGTTCTTTATTTCGCGGTGTGTTCAACAATGGTAAGGAAGTGTTGGCTGTTAAAAGAATGAGAGGGGATGTTTCTAAAGAGGTCAATTTGCTGAAAAGGATCAATCATTTCAACCTGATAAAGCTTCAGGGTTACTGTGAAAACAAATCTTGCATCTATCTTGTTTATGAATACATGGAAAATGGATCTTTAAGGGAATGGCTTAGCAAGAATAGTTCCATTGAGCACCAAAGTTGGGGAAGGAGGATACAGATTGCTGTGGATATTGCCAATGGACTTCAATATCTTCACAACTTCACAGAGCCTTGCTATGTACACAAGGACATAAACAGTGGAAACATTCTACTAAACAAAGATTTAAGGGCCAAGATAGCAAAATTTGCTCTTGTTGAAGAATCAGAGAGGATGGTTACTTCTGATTGTCCCACATCACATGTTGTAGGATCGGCCGGTTATTTAGCTCCCGAGTATCTGGAAGCAGGGATAGTCAGTACCAAAATGGATGTCTATGCCTTTGGAGTGGTGCTGTTGGAACTGATCACTGGCAAAGATTCTATAACCCTACAAGATGGAAGAGAAGTAATGCTTTATGAAATCATAGAAAGTATAATTGGCAAAGAGAATGAAGAAGAGAAAGTGAGTTTGTTCATTGATCCTTGCCTCGTCGAAAGCTGTAGGAAAGCAAGTGCACTGCAGCTAGTTAAATTGGGTCTAACCTGTTTGATCCAAGAAGCAGAAAGCAGACCAAACATTGAAGAGGTAGTCTCCAGCTTATTGAAAATACAGGCAAATGATATGCAACAAAGTATATCGTCCATTATCAAAAGCCTAAGCATGGAGCGGTGA 1917 0.4079 MKKNNFAMNHVVLNFIFFILSVFLSLKTNAQQNYSGNSIFTCKNSDDTGPSPAFLYTCNGFNKSCMAFLSFRTKPPYNSVNSISNLTSSNPKELARVNGATLLTVFPPGKEVIVPVNCSCLTNDYYQAETKYILGPHPTYFIVANDTFQGLTTCDSLMRVNPYGELDLYPRMELQVPLRCACPTYHQKTNGTKYLLTYSVTWGDNISNIATRFNVTEGNLVDANGFSTQTQVLYPFTTVLIPFPSEPRSPTTIVANDPPTPGGCSFKKCKSTRKTLHIALTTSVPVLCVFLFVLILFLLRKRAAGLFKRRARGKKKTGVFSEVIREEIAIIEHLSKVYRFEEIKEATENFSSKNRIKGSLFRGVFNNGKEVLAVKRMRGDVSKEVNLLKRINHFNLIKLQGYCENKSCIYLVYEYMENGSLREWLSKNSSIEHQSWGRRIQIAVDIANGLQYLHNFTEPCYVHKDINSGNILLNKDLRAKIAKFALVEESERMVTSDCPTSHVVGSAGYLAPEYLEAGIVSTKMDVYAFGVVLLELITGKDSITLQDGREVMLYEIIESIIGKENEEEKVSLFIDPCLVESCRKASALQLVKLGLTCLIQEAESRPNIEEVVSSLLKIQANDMQQSISSIIKSLSMER* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0259 638 CDD LysM 197 241 IPR018392 -
Psa6g0259 638 SUPERFAMILY LysM domain 196 242 IPR036779 -
Psa6g0259 638 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 14 625 - -
Psa6g0259 638 SUPERFAMILY Protein kinase-like (PK-like) 340 625 IPR011009 -
Psa6g0259 638 Pfam LysM domain 198 242 IPR018392 -
Psa6g0259 638 ProSiteProfiles LysM domain profile. 196 241 IPR018392 -
Psa6g0259 638 ProSiteProfiles Protein kinase domain profile. 296 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0259 638 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 14 625 - -
Psa6g0259 638 Gene3D Phosphorylase Kinase; domain 1 313 415 - -
Psa6g0259 638 Gene3D Transferase(Phosphotransferase) domain 1 416 635 - -
Psa6g0259 638 Pfam Protein kinase domain 376 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0259 638 SMART LysM_2 197 242 IPR018392 -
Psa6g0259 638 Gene3D LysM domain 183 252 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0259 Psa-Chr6 7841828 7844037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0259 12 620 Receptor kinase-like Gene Family AT2G23770 38.486 5.86e-125 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Psa6g0259 Pkinase 1.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0259 - - gmx:100806221 859.366