Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0258 ATGGGTTGGCTTAGTAGAATTTTTAAAGGCTCTGAACATAGGGTTTCGGAAGGGCATTACTATAAAGATGATTCTGGTTATTACCTGCCATCAACTTCAGGGGATGTTTGGACTGAGAATGAGAATGAAGATATGGATCGCGCTATTGCGTTGTCGCTTGCAGAAGAAAATCACAAAGTGAAAAATGTAAATGACCACAAGTCACAATTAGAAGAAGATGAACAACTTGCCAGAGCAATAGAAGAAAGCCTAAATTTGGAGTCACCTCCCAAACACGGAAATGATAACAATACTTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGGCGATATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACGTCTGGAAATTACCCTTACCATAAAGCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAATACTCCTCGCTGTTGTAGTTGTGAGCGAATGGAGCCACAAGGGACAGGATATATTGCCCTTAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTTGATTCTGCCATCATGGATACTAATGAATGCCAGCCCCTTCATGCTGATATACTAAAGTTCTATGAAAGCATAAATATGAAACTGGATCAGCAAGTTCCTCTACTGTTGGTTGAAAGACAAGCACTAAACGAAGCAAGGGAGGGAGAGAAGAATGGCCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCTGAGGAACTCAGCACTATTTCTAGACGGCCTAGACTTGGGACAGGAAATAAAGCAATGGACATGAGAGCACAGCCATACAAACTGAGTTCACGCTGTGATGTTACAGCAATTCTCATTCTATATGGTCTTCCAAGGTTACTTACCGGATCAATTCTTGCACATGAGATGATGCATGCATGGCTGCGGCTAACAGGTTTTCGGACTCTTAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTGCATCAGGAAGCAATGTTGTCTCATCCTCATCCTCATCTGCATCATATACATCTAAGAAAGGTAAAAGACCTCCTTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCGGTTTATGGAGATGGATTTAGGGCAGGTCAAAAAGCAGTTCGCAAGTATGGCCTACAGAGGACCCTTCACCATATCAAGATGGCGGGGAGTTTCCCATTTTAA 1419 0.4341 MGWLSRIFKGSEHRVSEGHYYKDDSGYYLPSTSGDVWTENENEDMDRAIALSLAEENHKVKNVNDHKSQLEEDEQLARAIEESLNLESPPKHGNDNNTYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTPRCCSCERMEPQGTGYIALKDGRKLCLECLDSAIMDTNECQPLHADILKFYESINMKLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRLGTGNKAMDMRAQPYKLSSRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLTGFRTLSQDVEEGICQVLAHMWLESELSSASGSNVVSSSSSSASYTSKKGKRPPFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIKMAGSFPF* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0258 472 PANTHER PROTEIN DA1-RELATED 2 1 472 IPR045218 -
Psa6g0258 472 Coils Coil 53 83 - -
Psa6g0258 472 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Psa6g0258 472 Pfam Ubiquitin interaction motif 71 84 IPR003903 -
Psa6g0258 472 Pfam Ubiquitin interaction motif 41 55 IPR003903 -
Psa6g0258 472 PANTHER PROTEIN DA1-LIKE 1 472 - -
Psa6g0258 472 ProSitePatterns LIM zinc-binding domain signature. 112 146 IPR001781 -
Psa6g0258 472 SMART uim 71 90 IPR003903 -
Psa6g0258 472 SMART uim 40 59 IPR003903 -
Psa6g0258 472 Pfam Protein DA1 262 466 IPR022087 -
Psa6g0258 472 Pfam LIM domain 112 166 IPR001781 -
Psa6g0258 472 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Psa6g0258 472 ProSiteProfiles LIM domain profile. 110 170 IPR001781 -
Psa6g0258 472 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 200 - -
Psa6g0258 472 SMART lim_4 111 163 IPR001781 -
Psa6g0258 472 CDD LIM_DA1 112 164 - -
Psa6g0258 472 Gene3D Cysteine Rich Protein 108 171 - -
Psa6g0258 472 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0258 Psa-Chr6 7835340 7841619 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g0258 DA1-like 1.3e-95 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0258 - - gmx:100783253 828.165