Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0238 ATGCAAACTTTATTTTCTTCTTCTTTAGAACCTGACCTTTCTTTAAACATAAGTCCACCTTCCATTTCAGATTCTCATCAAATCAATGGAATAACAAAAGCACTTTATCATCATCATCATCATCATCATCATAATGATAATATATGTTCAATATCAACTACTTCTGATTCTGCTAGTAGTGAAAGTGAGTTAAGCCATGAAAATCCCTTCATCCATCATCATCATCATCATGAGCCAACATTGAGATTAGGTTTCGGAAACTCAGATTTGATGAATCCACATCATCATAATCATCATCTTCATCATCATCAAGCTCACGGCGTGTCGAGAAACTTCATCCAACCTCACATCTACGGCCGTGATTTCAAGCGTAATACACGAACCGGTGTCAAAAGAAGTGTTAGAGCTCCAAGAATGAGATGGACTACAACTCTTCATTCTCATTTTGTTCATGCTGTTCAACTTCTTGGTGGCCATGAAAGAGCAACACCAAAATCTGTGTTAGAGTTGATGAATGTGAAGGATCTAACCCTAGCACATGTGAAGAGTCACTTACAGATGTATAGAACAGTGAAAACCACTGACAAATCAGGAACAGGTCATGGGATGCTACAGACACAAGCAAAAAGTCTAGCTTTTGGTGCACATCTCCATGAAGACACATTGGCAAGAATCAATGGAGACAAATACAAACAATTCTGA 702 0.3803 MQTLFSSSLEPDLSLNISPPSISDSHQINGITKALYHHHHHHHHNDNICSISTTSDSASSESELSHENPFIHHHHHHEPTLRLGFGNSDLMNPHHHNHHLHHHQAHGVSRNFIQPHIYGRDFKRNTRTGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKTTDKSGTGHGMLQTQAKSLAFGAHLHEDTLARINGDKYKQF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0238 233 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 2 205 - -
Psa6g0238 233 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 2 205 IPR044847 GO:0000976|GO:0006355|GO:0010158
Psa6g0238 233 Pfam Myb-like DNA-binding domain 138 189 IPR001005 -
Psa6g0238 233 Gene3D - 136 193 - -
Psa6g0238 233 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 137 190 IPR006447 GO:0003677
Psa6g0238 233 SUPERFAMILY Homeodomain-like 134 190 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0238 Psa-Chr6 7187053 7189616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0238 3 209 G2-like Transcription Factor Family AT5G42630 54.067 2.25e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa6g0238 Myb_DNA-binding 9.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0238 - - gmx:106795723 237.654