Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0231 ATGGAAGTGGATATGGAAAATTCAACATCGAGTGTTACTGGTGAATCATCTATACCTGGCTCTGATGTTCAAGAACAAAACCCTGTATCTTCTGCTCAACCAACTTTGCCCCAGCCAACTCAACCTGTTATTCCACCAGTTATTACTCCTGTTGTGCCTCCTCTGGCTCCAATTCCTGTGGTTCCTTCCTCTCTTGTCCGGCCGCTGGCACCACTCCCAGTCCGGCCACCGGTTATTAAGCCACCAGTGCCACAAAATGGAGACGCTGGGTCTAGTGATTCTGAGTCAGATGGTGATGATGCAGACACCAGAATTAATAAGGGCACAGGCGAGTATGAGATATCAGAAGAGAGTAGACTGGTGAGGGAGCGACAGGAGAAAGCGATGCAAGACCTCATGATGAGAAGACGTGCTGCTGCTCTTGCTGTTCCCACGAATGACATGGCAGTGAGGGCCCGTCTTCGCCATCTTGGTGAGCCAATTACTCTCTTTGGCGAGAGGGAGATGGAGAGACGGGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCCGATGGTCAGCTGGAAAAGCTAACGAAAGCTCTTGAGGATGAAGAGGCCGCAACTTTTGCTCCAAAAGATGAGGCTGAGGATGATGTGCAGTATCCTTTTTACACTGAAGGGTCAAAGTCTCTCCTCGATGCAAGGATTGATATTGCTAAATATTCTTTAGTAAGGGCTGCATTGCGTATTCAACGTACCCAGAGAAGAAGAGATGATCCGGATGAAGATGTGGACGCGGAGATGGATTGGACATTGAAGCAGGCTGCGAATTTGAATCTTGAATTCAGTGAAATCGGAGATGATCGGCCACTTACTGGTTGCTCGTTCTCCCGGGATGGAAAAGGGCTTGCTACTTGTTCTCTAACTGGAGCTTCCAAGTTATGGAGCATGCCTAATGTAAAAAAAGTTTCTACCTTCAAGGGGCACACCGAGCGTGCTACTGATGTTGCTTATTCTCCTGTCCACAATCATTTAGCTACTGCATCTGCCGACCGGACAGCAAAGTATTGGAATGATCAAGGATCTCTTTTGAGAACATTTGAGGGTCATCTTGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACTTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACGTTGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTAGCTTTTCATCACGATGGATCGTTAGCCGCGTCTTGTGGCCTAGATGCTCTGGCTCGTGTATGGGACCTCCGAACTGGGAGAAGTGTTCTTGCACTAGAAGGTCATGTCAAACCGGTTCTTGGCATCAGTTTTTCTCCTAATGGATATCATTTAGCCACTGGTGGTGAAGATAACACTTGTCGCATTTGGGACTTGAGGAAGAAGAAATCCTTGTACACCATTCCTGCTCACTCTAATTTAATATCGCAATTTGAGCCACAAGAGGGTTACTTTTTGGTAACTGCATCATATGACATGACAGCTAAGGTTTGGTCGGGCCGGGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCAAAAGTTACTTCTCTGGATGTCCTTGGAGATGGTGGGTATATAGTTACTGTCTCCCATGATCGCACCATAAAACTGTGGTCCAGCGGCACTGCTAGTGAGCAAGCTATGGATGTTGACTAA 1719 0.4729 MEVDMENSTSSVTGESSIPGSDVQEQNPVSSAQPTLPQPTQPVIPPVITPVVPPLAPIPVVPSSLVRPLAPLPVRPPVIKPPVPQNGDAGSSDSESDGDDADTRINKGTGEYEISEESRLVRERQEKAMQDLMMRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLTKALEDEEAATFAPKDEAEDDVQYPFYTEGSKSLLDARIDIAKYSLVRAALRIQRTQRRRDDPDEDVDAEMDWTLKQAANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSLTGASKLWSMPNVKKVSTFKGHTERATDVAYSPVHNHLATASADRTAKYWNDQGSLLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSGTASEQAMDVD* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0231 572 PANTHER BNAC04G01920D PROTEIN 110 564 - -
Psa6g0231 572 ProSitePatterns Trp-Asp (WD) repeats signature. 464 478 IPR019775 -
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 528 560 - -
Psa6g0231 572 MobiDBLite consensus disorder prediction 1 37 - -
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 352 IPR001680 GO:0005515
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 445 479 - -
Psa6g0231 572 SUPERFAMILY WD40 repeat-like 272 559 IPR036322 GO:0005515
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 352 - -
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 528 569 IPR001680 GO:0005515
Psa6g0231 572 SUPERFAMILY PRP4-like 128 183 IPR036285 -
Psa6g0231 572 MobiDBLite consensus disorder prediction 1 41 - -
Psa6g0231 572 MobiDBLite consensus disorder prediction 97 117 - -
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 486 IPR001680 GO:0005515
Psa6g0231 572 SMART WD40_4 354 393 IPR001680 GO:0005515
Psa6g0231 572 SMART WD40_4 271 310 IPR001680 GO:0005515
Psa6g0231 572 SMART WD40_4 480 518 IPR001680 GO:0005515
Psa6g0231 572 SMART WD40_4 438 477 IPR001680 GO:0005515
Psa6g0231 572 SMART WD40_4 521 560 IPR001680 GO:0005515
Psa6g0231 572 SMART WD40_4 396 435 IPR001680 GO:0005515
Psa6g0231 572 SMART WD40_4 313 352 IPR001680 GO:0005515
Psa6g0231 572 SMART pr04_2 145 198 IPR014906 -
Psa6g0231 572 Pfam WD domain, G-beta repeat 442 477 IPR001680 GO:0005515
Psa6g0231 572 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Psa6g0231 572 Pfam WD domain, G-beta repeat 355 393 IPR001680 GO:0005515
Psa6g0231 572 Pfam WD domain, G-beta repeat 523 560 IPR001680 GO:0005515
Psa6g0231 572 Pfam WD domain, G-beta repeat 316 352 IPR001680 GO:0005515
Psa6g0231 572 Gene3D - 498 568 IPR015943 GO:0005515
Psa6g0231 572 Gene3D - 279 353 IPR015943 GO:0005515
Psa6g0231 572 ProSitePatterns Trp-Asp (WD) repeats signature. 422 436 IPR019775 -
Psa6g0231 572 Gene3D - 354 497 IPR015943 GO:0005515
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 402 IPR001680 GO:0005515
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 361 398 - -
Psa6g0231 572 MobiDBLite consensus disorder prediction 77 117 - -
Psa6g0231 572 ProSitePatterns Trp-Asp (WD) repeats signature. 380 394 IPR019775 -
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 444 IPR001680 GO:0005515
Psa6g0231 572 CDD WD40 284 560 - -
Psa6g0231 572 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Psa6g0231 572 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Psa6g0231 572 PRINTS G protein beta WD-40 repeat signature 464 478 IPR020472 -
Psa6g0231 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 440 - -
Psa6g0231 572 Pfam pre-mRNA processing factor 4 (PRP4) like 150 176 IPR014906 -
Psa6g0231 572 Coils Coil 181 201 - -
Psa6g0231 572 Gene3D - 121 189 IPR036285 -
Psa6g0231 572 PANTHER WD40 REPEAT PROTEIN 110 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0231 Psa-Chr6 7074893 7077899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0231 339 567 U-box Gene Family AT2G33340 25.523 2.19e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0231 K12662 - gmx:100788948 867.84