Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0214 ATGGCTTCAAGTTCATCTTGGACAACAAAACAGAACAAAAAATTTGAGAATGCTTTGGCCATCTATGACAAGGACACCCCAGATAGGTGGCAGAAGCTAGCAAAGGCTGTTGGAGGAAAAACAGTGGAGGAAGTGAAAAGACATTATGAGATGTTGGTTGAAGATTTGAAGCAGATTGAAGAAGGTCATGTTCCATTACCAAAATACAGAAATGCTCCAACAATAGGAGGAGGTAGCATTAAAAGTTACACTTTCACAGATGAACAACAAAGGTTGAAGTTTCTAAGCATTCAGTGA 297 0.3906 MASSSSWTTKQNKKFENALAIYDKDTPDRWQKLAKAVGGKTVEEVKRHYEMLVEDLKQIEEGHVPLPKYRNAPTIGGGSIKSYTFTDEQQRLKFLSIQ* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0214 98 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Psa6g0214 98 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Psa6g0214 98 SMART sant 3 55 IPR001005 -
Psa6g0214 98 CDD SANT 6 53 IPR001005 -
Psa6g0214 98 Gene3D - 1 66 - -
Psa6g0214 98 Coils Coil 42 62 - -
Psa6g0214 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 98 IPR044636 GO:0003700
Psa6g0214 98 SUPERFAMILY Homeodomain-like 6 60 IPR009057 -
Psa6g0214 98 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Psa6g0214 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0214 Psa-Chr6 6715636 6717754 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa6g0214 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0214 - - gmx:100804049 171.014