Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0210 ATGAAACAAAGTGACATGTTTGCTCAAATAGGATCCTTGATAGCTTCCTTGATGTTCATTTGGGCTATTTTTCAACAATATTTTCCTTATCAACTAAGAAACCAACTTGAGAAATACTCACAAAAACTTGCTACTTTGATCTACCCTTATATCCAAATCACATTTCATGAATTCACTGGTGAACAAAAGCTCATGAGAAGTGAAGCTTATTCTTCCATAGAGAATTACCTTAGCACAAAAGCATCCACACAAGCAAAGAGACTCAAAGGTGATATAGCTAAGAATAATCAATCACTTGTTCTTAGCATGGATGATCATGAAGAGGTTAGTGATGAGTTTAATGGAGTTAAACTTTGGTGGGCTAGTGGCAAAAATGTATCAAAGCCAAATTCATTTTCACTTCATCATAACATAGATGAGAAAAGGTACTATAAACTAACTTTTCATAAAGTTAATAGAGATTTGATTTTAGGTAGTTATCTTAGTTTTGTACTAAAAGAAGGTAAAGCAATTAAGGTGAGGAATAGGCAAAGGAAGCTTTATACTAATAGTGGTTCTTATTGGAGTCATGTTGTGTTTGAACATCCATCAACATTTGAAACATTGGCTATGGATTTAGAGAAGAAGAAAATGATTATTGATGATCTTGTTACATTTAGTAAAGCTGGTGAATTCTATGGAAGAATTGGTAGAGCTTGGAAAAGAGGCTATTTGCTATATGGTCCTCCCGGGACCGGAAAATCGACGATGATTGCGGCTATGGCGAATTTGTTAGGCTATGATCTTTATGATCTTGAGTTGACTGCTGTGAAGGATAATACTGAATTGAGGAAGCTTTTGATTGAGACGTCGAGTAAATCTATAATTGTGATCGAAGATATTGATTGTTCGCTTGATTTAACCGGTCAGAGGACGAAGAAAAAGGCGAAGAAGGACGACGAGGAGGAGAGAAAAAGTGGAGTTATGATGGAAGAAAGAGAAGGGAGAATGAGTCAAGTAACACTTTCTGGATTATTGAATTTCATTGATGGATTATGGTCTGCATGTGGTGGTGAAAGACTAATAGTTTTCACAACAAATTATGTTGAGAAATTGGATCCTGCATTGGTTAGAAAAGGTAGAATGGATAAACATATAGAGTTATCTTATTGTGGATTTGAGGCATTCAAGATTTTGGCTAAGAATTATCTTAATATTGAGTCACATTATTTGTTTGATACAATATGTGAATTGTTGGAGGAAGTTGAAATTACTCCAGCTGATGTTGCTGAGCATTTGATGCCAAAGAGTTCTTCTGGTGATGTACAAGTTTATTTGAAAAGTTTGATTCATGCACTTCAATTGGCAAAAGAAGGAGCTAAAGTAAAATCAATGGAAGATGCAAAGAAACTATGA 1395 0.3484 MKQSDMFAQIGSLIASLMFIWAIFQQYFPYQLRNQLEKYSQKLATLIYPYIQITFHEFTGEQKLMRSEAYSSIENYLSTKASTQAKRLKGDIAKNNQSLVLSMDDHEEVSDEFNGVKLWWASGKNVSKPNSFSLHHNIDEKRYYKLTFHKVNRDLILGSYLSFVLKEGKAIKVRNRQRKLYTNSGSYWSHVVFEHPSTFETLAMDLEKKKMIIDDLVTFSKAGEFYGRIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRTKKKAKKDDEEERKSGVMMEEREGRMSQVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALVRKGRMDKHIELSYCGFEAFKILAKNYLNIESHYLFDTICELLEEVEITPADVAEHLMPKSSSGDVQVYLKSLIHALQLAKEGAKVKSMEDAKKL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0210 464 Gene3D - 380 450 - -
Psa6g0210 464 Gene3D - 189 379 IPR027417 -
Psa6g0210 464 Pfam ATPase family associated with various cellular activities (AAA) 238 382 IPR003959 GO:0005524|GO:0016887
Psa6g0210 464 SMART AAA_5 233 385 IPR003593 -
Psa6g0210 464 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Psa6g0210 464 Pfam Domain associated at C-terminal with AAA 28 122 IPR025753 -
Psa6g0210 464 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 3 462 - -
Psa6g0210 464 CDD AAA 234 383 - -
Psa6g0210 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 429 IPR027417 -
Psa6g0210 464 PANTHER BCS1 AAA-TYPE ATPASE 3 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0210 Psa-Chr6 6631356 6632750 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0210 206 381 Calmodulin-binding Proteins AT3G56690 25.543 8.69e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0210 K08900 - rcu:8275997 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0210 6 6631356 6632750 Psa6g0210 6 6631356 6632750 ECH