Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0198 ATGACAGACGGTCATCTCTTCAACAATATTACCCTCGGCGGCCGCGGTGGCACGAATCCGGGGCAGATAAAAATATATTCTGGTGGGATTGTATGGAAGAGACAAGGAGGTGGTAAATCGATTGATGTTGATAAGTCGGATATAATGGGTGTGACATGGATGAAGGTTCCAAAGACTAATCAACTTGGTGTTCAGATTAAAGATGGGCTGTTCTACAAATTCACTGGTTTTCGTGATCAGGATGTTGTAAGCTTGGCCAATTATTTCCAAAACACCTTTGGCATAACTGTTGAGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGACCTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCTCAAACAAACCTTCAAGGAAAAAATGATGTGATATTGGAGTTTCATGTGGATGACACAACTGGAGCAAATGAGAAAGATTCTTTGATGGAGATGAGTTTCCACATACCAAGTTCCAACACCCAGTTTGTTGGTGATGAAAATCACCCTTCTGCTCAGGTTTTCCGTGATAGAATAATGTCTATGGCTGATGTTGGTGCTGGAGGAGAAGATGCCGTTGTTACGTTTGATGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAGTTACACCTGTCATTCTTGCGACTTCAAGGACAGGCTAACGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCACATAGTGATGCAGTTTGAAACTGATACTGTGGTCGATAGTGAATTGGCAATAAGTGAAGATCTTTATAACTCAAAATACAAAGACAAGTTGGAGCTGTCTTACAAGGGGCTTATCCATGAAGTATTCACCACAGTATTACGTGGTTTGTCTGGGGGCAAAGTTACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGACATGCTGCTGGTGGTTCAAACATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAGCAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGGTTTTATAAGTTCGAAGGGCTTGAAAATTATGAATTTAGCTGATGCCCAACCAGCTGTTGGTGGTGTGGCTAAGGTTCTTGAGAATGATGACGATGATGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTATCGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGACTCTGATGCCAGCCAAAGTGGTGGTGAGACGGAGAAGCCTGCCAAGAAGGAACCAAAGAAGGACTTGTCTTCTAAGGCGTCTAGTTCTAAGAAGAGATCAAAAGATGCTGATGTTGATGGAGTAAAGAAGAAACAGAAGAAGAAAAAGGACCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTCGGAGAGAAATGGAAAAACCTGTCAGCGGAGGAGAAGGAACCTTACGAGGCAAAAGCCCAAGCGGATAAAAAGCGTTACAAGGATGAGATTAGTGGCTACAAGAATCCTCAACCTTTGAATATTGATTCTGGAAATGAGTCTGACAGTGCCTAA 1986 0.4159 MTDGHLFNNITLGGRGGTNPGQIKIYSGGIVWKRQGGGKSIDVDKSDIMGVTWMKVPKTNQLGVQIKDGLFYKFTGFRDQDVVSLANYFQNTFGITVEEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFVGDENHPSAQVFRDRIMSMADVGAGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDTVVDSELAISEDLYNSKYKDKLELSYKGLIHEVFTTVLRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLADAQPAVGGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVIDKDDGGSPTDDSGADDSDASQSGGETEKPAKKEPKKDLSSKASSSKKRSKDADVDGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQPLNIDSGNESDSA* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0198 661 MobiDBLite consensus disorder prediction 617 661 - -
Psa6g0198 661 Gene3D - 1 93 IPR011993 -
Psa6g0198 661 SMART Rtt106_2 367 460 IPR013719 -
Psa6g0198 661 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 362 - -
Psa6g0198 661 PANTHER FACT COMPLEX SUBUNIT SSRP1 363 659 - -
Psa6g0198 661 MobiDBLite consensus disorder prediction 511 585 - -
Psa6g0198 661 Pfam HMG (high mobility group) box 577 645 IPR009071 -
Psa6g0198 661 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Psa6g0198 661 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Psa6g0198 661 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Psa6g0198 661 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Psa6g0198 661 Gene3D - 362 466 IPR011993 -
Psa6g0198 661 Pfam POB3-like N-terminal PH domain 7 99 IPR035417 -
Psa6g0198 661 CDD HMGB-UBF_HMG-box 577 642 - -
Psa6g0198 661 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 362 - -
Psa6g0198 661 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 363 659 - -
Psa6g0198 661 CDD PH1_SSRP1-like 207 340 - -
Psa6g0198 661 SMART hmgende2 576 646 IPR009071 -
Psa6g0198 661 Pfam Histone chaperone Rttp106-like 369 458 IPR013719 -
Psa6g0198 661 Gene3D - 199 338 - -
Psa6g0198 661 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 577 645 IPR009071 -
Psa6g0198 661 SUPERFAMILY PH domain-like 364 459 - -
Psa6g0198 661 SUPERFAMILY PH domain-like 206 362 - -
Psa6g0198 661 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Psa6g0198 661 MobiDBLite consensus disorder prediction 528 569 - -
Psa6g0198 661 MobiDBLite consensus disorder prediction 647 661 - -
Psa6g0198 661 SUPERFAMILY HMG-box 565 646 IPR036910 -
Psa6g0198 661 Gene3D - 95 179 IPR038167 -
Psa6g0198 661 MobiDBLite consensus disorder prediction 617 642 - -
Psa6g0198 661 Gene3D High mobility group box domain 561 652 IPR036910 -
Psa6g0198 661 CDD PH2_SSRP1-like 363 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0198 Psa-Chr6 6258660 6263995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0198 573 645 ARID Transcription Factor Family AT1G04880 39.726 3.63e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Psa6g0198 POB3_N 2.2e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0198 K09272 - gmx:100805034 1089.33