Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0191 ATGTCATTCAAGAGTATTGTGAGAGAGATCAAGGAGATGAAAGAAGGAATTGGAATTATGTATAGAAAAAAGGTAGAAGCTAAGAATATGTATAGACATGGAAAATCTCACATTGCACCAGAATGTTCATCACCAATATCAATATCACTATCACCAATCGAAACACCGTCTTCGTCGTCATCATCATTGTCACAGAGCAAATGGGCTAGTTTACCTCCTGAGTTGCTGTTAGACATAATTCAAAGAGTGGAAGCTAGTGAAACCTCTTGGCCGTCTCGCCGAGCACTTGTAGCTTGTGCCTTAGTTTGTAGATTGTGGAGAGAGATAACAAAAAGTGTGGTTAAGACACCTGAACAATGTGGTTGGATTACTTTCCCTATTTCGTTGAAGCAGCCTGGTCCAAGAGACAATTCAATTCAGTGTTTTATTAAGAGAGAAAGGGTTTCTTCTACATATAGTTTATATCTTGGTTTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTTCTCTTGGCGGCAAAGAAGATAAGAAGAGCAACATGTACAGAATTTTTAATATCATTGGTATCTGATGATTTCTCTCAAGCTAGCAATACTTACATTGGAAAGTTAAGGTCTAATTTTCTCGGGACGAAGTTCACGATCTTGGACGGTCATTCTCCACGTGATTCTTCGCTTCCATCGAATTGCGAGTTGCATCAAAAGGTCCATCGGAAGCAAGTACTTCCGAGAGCTGCTACTGCTAACTATAAAGTAGCAACAGTATCTTATGAACTCAATGTTCTTCGTACGAGAGGTCCAAGGCGAATGCGGTGTACGATGCACTTAATTCCTATATCTTCTGTTCAAGAGGGGGGGACTGCTCCTACTCCTATGGAGTTTAGCAATTTTCGTAATGAGCGTGAATCTTCAAAAGGAAAGAAACCAGAAGTTGTTGAATTTGGCTCAACTTGCACTGATTCTGCAAGAGAACCACTGATTTTGAAAAACAAAGCACCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAATTTCAAGGGGCGGGTTACGGTGGCTTCGGTTAAGAATTTCCAGCTTGTAGCAGCTGCAGAACCTTGCCACAACGTTTCGGCTGCAGAACAAGAGAAAGTTATACTTCAATTTGGAAAAATTGGCAAGGACATATTCACCATGGATTTTCGATATCCTCTCTCCGCTTTTCAAGCTTTCGCAATCTGTTTGAGTAGCTTTGACACAAAACCAGCTTGTGAATGA 1257 0.4081 MSFKSIVREIKEMKEGIGIMYRKKVEAKNMYRHGKSHIAPECSSPISISLSPIETPSSSSSSLSQSKWASLPPELLLDIIQRVEASETSWPSRRALVACALVCRLWREITKSVVKTPEQCGWITFPISLKQPGPRDNSIQCFIKRERVSSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVSDDFSQASNTYIGKLRSNFLGTKFTILDGHSPRDSSLPSNCELHQKVHRKQVLPRAATANYKVATVSYELNVLRTRGPRRMRCTMHLIPISSVQEGGTAPTPMEFSNFRNERESSKGKKPEVVEFGSTCTDSAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCHNVSAAEQEKVILQFGKIGKDIFTMDFRYPLSAFQAFAICLSSFDTKPACE* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0191 418 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Psa6g0191 418 SUPERFAMILY F-box domain 59 112 IPR036047 GO:0005515
Psa6g0191 418 Pfam F-box domain 68 114 IPR001810 GO:0005515
Psa6g0191 418 Pfam Tub family 129 413 IPR000007 -
Psa6g0191 418 Gene3D - 61 116 - -
Psa6g0191 418 SUPERFAMILY Tubby C-terminal domain-like 117 418 IPR025659 -
Psa6g0191 418 Gene3D Tubby Protein; Chain A 126 418 IPR025659 -
Psa6g0191 418 PANTHER TUBBY-RELATED 1 418 - -
Psa6g0191 418 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 418 - -
Psa6g0191 418 ProSitePatterns Tub family signature 2. 403 418 IPR018066 -
Psa6g0191 418 PRINTS Tubby superfamily signature 184 200 IPR000007 -
Psa6g0191 418 PRINTS Tubby superfamily signature 200 224 IPR000007 -
Psa6g0191 418 PRINTS Tubby superfamily signature 249 276 IPR000007 -
Psa6g0191 418 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Psa6g0191 418 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Psa6g0191 418 PRINTS Tubby superfamily signature 375 394 IPR000007 -
Psa6g0191 418 PRINTS Tubby superfamily signature 396 418 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0191 Psa-Chr6 5952136 5955814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0191 24 418 TUB Transcription Factor Family AT1G47270 61.042 4.31e-166 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa6g0191 Tub 1.4e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0191 K19600 - gmx:100796250 658.292