Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0183 ATGTTCTCCAGGCTCGCATTGACTTCCTCCAAACGCCTCTCCGGCGGCGGCTTCACGTCCGTCGCAACTCAACCGAATCTTCTCCGGCAACCGACTAAGAGCCGCGATTCTCAGGGTTTGGTTCCAGTTACAGTGAAGCAGATCAGTGAAGCTTCTCAATCTGGTGATGAAAAGTCCAATTTCGCGATCAATGGCGTGGATCTCACTAATGTACGGAACCCCTTCTACATATCCTCCAACAAACTCGTCTATCAACACTCCTGTCAAAAGTGCACTGAATGTGGATCTCAGGCACCATCCAATCCGGGATATACACAATATAGCACTGATGGACTTAAGGACTGTGATAAATTAGTGATTGACTATCTGCAGCAGCATTCAAGCATGTTAGATGAAAGGGGAATACATGTTGAAGAACTAGCAAGAGAGCTCAAGCTTCCATTGGACAGGATCAAGTTGTCTGTAAAGGCTCTTGAAGATGATGGTCTGGTATACTCCACCATAGATGACTCCCACTACAAACAAGCTTGA 531 0.4652 MFSRLALTSSKRLSGGGFTSVATQPNLLRQPTKSRDSQGLVPVTVKQISEASQSGDEKSNFAINGVDLTNVRNPFYISSNKLVYQHSCQKCTECGSQAPSNPGYTQYSTDGLKDCDKLVIDYLQQHSSMLDERGIHVEELARELKLPLDRIKLSVKALEDDGLVYSTIDDSHYKQA* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0183 176 PANTHER REPLICATION PROTEIN A-RELATED 12 72 IPR040260 -
Psa6g0183 176 PANTHER REPLICATION PROTEIN A-RELATED 91 176 IPR040260 -
Psa6g0183 176 SUPERFAMILY "Winged helix" DNA-binding domain 110 174 IPR036390 -
Psa6g0183 176 Pfam Replication protein A C terminal 100 170 IPR014892 -
Psa6g0183 176 Gene3D - 106 176 IPR036388 -
Psa6g0183 176 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 91 176 - -
Psa6g0183 176 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 12 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0183 Psa-Chr6 5674157 5678838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0183 1 71 Core DNA Replication Machinery Family AT2G24490 50.667 2.67e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0183 K10739 - gmx:100802512 117.857