Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0182 ATGGAAGGTTTTGTGTTCAATGGAGGAAGTGAAGCTGAGACCAACGGAAGTGACCATAATTGCTTCTTCTATATGCAAATGGATGGTGTAGCATATGAGATGTTTAAAAGCCGTGATTCTCAGGGTTTGGTTCCAGTTACAGTGAAGCAGATCAGTGAAGCTTCTCAATCTGGTGATGAAAAGTCCAATTTCGCGATCAATGGCGTGGATCTCACTAATGTGACTTTGGTTGGAATGGTGTATGAGAAAACTGAGAGGAACACTGATGTTAATTTTGTTTTGGATGATGGAACTGGGCGGATCAAATGCCGAAGATGGGTCAATGAGACTTTTGACTCAAAGGAAATGGAGGAAGTATCGAATGACATGTATGTTCGTGTTTATGGGAACTTGAAAAGCTTTCAAGGTGTAAAGCAGCTTGGTGCCTTCTCTGTCAGGCCTGTGACAAATTTTGATGAGATCCCCTTTCACTTTATCGATTGCATACATAGCCACCTCCTTGCCAAAGTTAAGGGATATACACAATATAGCACTGATGGACTTGAGGACTGTGATAAATTAGTGATTGACTATCTGCAGCAGCATTCAAGCATGTTAGATGAAAGGGGAATACATGTTGAAGAACTAGCAAGAGAGCTCAAGCTTCCATTGGACAGGATCAGATTGTCTGTAAAAGCTCTTGAAGATGATGGTCTGGTATACTCCACCATAGATGACTCCCACTACAAACAAGCTTGA 738 0.416 MEGFVFNGGSEAETNGSDHNCFFYMQMDGVAYEMFKSRDSQGLVPVTVKQISEASQSGDEKSNFAINGVDLTNVTLVGMVYEKTERNTDVNFVLDDGTGRIKCRRWVNETFDSKEMEEVSNDMYVRVYGNLKSFQGVKQLGAFSVRPVTNFDEIPFHFIDCIHSHLLAKVKGYTQYSTDGLEDCDKLVIDYLQQHSSMLDERGIHVEELARELKLPLDRIRLSVKALEDDGLVYSTIDDSHYKQA* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0182 245 CDD RPA2_DBD_D 73 166 - -
Psa6g0182 245 Pfam Replication protein A C terminal 171 239 IPR014892 -
Psa6g0182 245 PANTHER REPLICATION PROTEIN A-RELATED 173 245 IPR040260 -
Psa6g0182 245 PANTHER REPLICATION PROTEIN A-RELATED 29 174 IPR040260 -
Psa6g0182 245 Pfam OB-fold nucleic acid binding domain 74 142 IPR004365 GO:0003676
Psa6g0182 245 SUPERFAMILY Nucleic acid-binding proteins 43 167 IPR012340 -
Psa6g0182 245 Gene3D - 175 245 IPR036388 -
Psa6g0182 245 PIRSF RPA32 168 245 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Psa6g0182 245 PIRSF RPA32 5 177 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Psa6g0182 245 SUPERFAMILY "Winged helix" DNA-binding domain 179 243 IPR036390 -
Psa6g0182 245 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 173 245 - -
Psa6g0182 245 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 29 174 - -
Psa6g0182 245 Gene3D - 39 169 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0182 Psa-Chr6 5633007 5638166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0182 10 243 Core DNA Replication Machinery Family AT2G24490 43.173 1.33e-71 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0182 K10739 - gmx:100802512 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0182 6 5633007 5638166 Psa6g0182 6 5633007 5638166 ECH