Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0179 ATGCCTCCGAAAATAAAGTGTAGGCTTCACCTCGACACTAAGAATTGTGACTTCCAAATGGAGCGTTACATTTTTAAACGCCGAAATGACGGGATTTACATTATAAATCTTGGGAAGACATGGGAGAAGCTCCAACTTTCCGCAAGGGTTATTGTTGCGATTGAGAATCCTCAGGACATTATTGTCCAATCTGCTAGGCCTTATGGACAGAGAGTTGTTCTCAAGTTCGCTCAGTATACGGGAGCTCATGCTATTGCTGGAAGGCACACTCCTGGAACCTTCACCAATCAGCTTCAAACTTCCTTCAGTAAGCCCCGTCTTCTCATCCTCACCGATCCAGAACCCCTGTGA 351 0.4558 MPPKIKCRLHLDTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLSARVIVAIENPQDIIVQSARPYGQRVVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSKPRLLILTDPEPL* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0179 116 PRINTS Ribosomal protein S2 signature 1 19 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa6g0179 116 PRINTS Ribosomal protein S2 signature 31 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa6g0179 116 PRINTS Ribosomal protein S2 signature 80 97 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa6g0179 116 PRINTS Ribosomal protein S2 signature 105 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa6g0179 116 Gene3D - 4 115 - -
Psa6g0179 116 PANTHER 40S RIBOSOMAL PROTEIN SA 7 113 - -
Psa6g0179 116 SUPERFAMILY Ribosomal protein S2 6 113 IPR023591 -
Psa6g0179 116 Pfam Ribosomal protein S2 12 99 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa6g0179 116 PANTHER 40S RIBOSOMAL PROTEIN SA 7 113 IPR005707 GO:0003735|GO:0006412|GO:0015935
Psa6g0179 116 CDD RPS2 5 113 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0179 Psa-Chr6 5610336 5610780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0179 7 113 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 86.916 6.29e-68 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0179 K02998 - gmx:100805318 207.223