Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0154 ATGGTTAAGCACAACAATGTTATCCCCAATGAACATTTTCGTAAACATTGGCAAAACTATGTGAAGACATGGTTTAATCAACCAGCAAGGAAGACCAGAAGACGCTTGGCTCGCCAAAAGAAGGCAGTTAAGATTTTCCCCAGGCCTACTGCTGGACCTCTTAGGCCAATTGTTCATGGACAAACTGCCAAATACAACATGAAACTCCGAGCTGGTAAAGGATTTTCTCTTGAAGAGTTGAAGGCTGCTGGTATCCCAAAGAAGCTTGCTCCAACCATTGGCATTGCCATAGATCATCGCCGCAGGAATCGTTCTTTGGAGGGTCTTCAAGCTAATGTGCAGAGGCTGAAGACATACAAGGCCAAATTGGTTGTTTTCCCAAGACGTGGACGCAAGACCAAGGCTGGTGACTCTACACCTGAGGAACTTGCTAATGCCACACAAGTCCAGGGATCATACTTGCCAATTGTGAGGGAGAAGCCAGCGGTTGAACTTGTTAAGATTACTGATGAAATGAAGGCATTCAAAGCTTATTACAAGCTCCGCCTTGAACGCACAAACAAGCGTCACCTTGGTGCTAGGCTCAAGAGGGCTGCTGAGGCAGAAAAGGAAGACAGCAAGAAGTGA 627 0.4625 MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTAKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGIAIDHRRRNRSLEGLQANVQRLKTYKAKLVVFPRRGRKTKAGDSTPEELANATQVQGSYLPIVREKPAVELVKITDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDSKK* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0154 208 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Psa6g0154 208 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Psa6g0154 208 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Psa6g0154 208 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Psa6g0154 208 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Psa6g0154 208 Gene3D - 167 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0154 Psa-Chr6 4793178 4795228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0154 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 85.864 2.49e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0154 K02873 - gmx:100805957 383.259