Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0137 ATGCAAAAGGATAAAGAAGTTGTTAGCAAAGGAAAAGATATGGAAACAGAAGGAAATGGTGTGAAAGAGGAAACCCTACCTCCTGGATTTCGATTTCATCCTACTGATGAAGAACTCATCACTTATTATCTTGTAAACAAGATTTCTGATTCTGATCATTTTACTTGCAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAACCATGGGAGCTTCCAGGGAAGGCAAAGATGGGTACAAAAGAATGGTACTTCTTCAGTTTACGAGATCGTAAATATCCAACTGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACTGGGAAAGACAAAGAGATATTCAACAGTGTTACAACAGAGTTGGTTGGCATGAAGAAGACTTTGGTTTTTTACAAAGGTAGGGCTCCTAGAGGAGAGAAAACTAATTGGATCATGCATGAGTACCGTATTCATTCCAAATCCTCCTTCAGATCCAACAAGGATGAGTGGGTGGTGAGTAGGGTATTCCGGAAGAGTGCAGGTGTAAAGAAGTACTACCCTTCTTTAAACCCTACAAGAGCAGTCATGAACAATCCTTACAATATTAATCTAGAAGTTGGTCCTAACAGCATGAACATGCCACCACCATCAATGATGCAGCTAGGGCTAGATTCTTCTGCTGCTGCTGCTCATAATTTCCATCTCTATGGAAGAAACTACATCAACACTCCAGATCACGTAGCGGAAGTCACTAGGCTTCTAAGAGCTGGTGTTGTGCCAATGCATCAATATTCTCATTTGAACTTTCCAGTATCATCATCATCATCATCACCCTTAGATGGTGGAGGATTCACCATTTCAGGACTTAATTTGAATCTTGGAGGTGGCGCTTCATCACAACAACCTATTTTGAGGCCAATGCCATCAACTACTACTACTACTCATATGGCTGCTCATCAACTGCATGATTTCAGCTCCAACATGATTAGTAATAATAGTAATAATGTTGTTGGCTATGGTGGTGGAGATGAAGTGAATAATCCAAATACTAATGGTCATGGAAATAATAATAGGTACAATATGCAGGGTGCTATGGACCACTGTGTGGATCTTGATCATTATTGGCCACCTTCTTACTGA 1131 0.4014 MQKDKEVVSKGKDMETEGNGVKEETLPPGFRFHPTDEELITYYLVNKISDSDHFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTTELVGMKKTLVFYKGRAPRGEKTNWIMHEYRIHSKSSFRSNKDEWVVSRVFRKSAGVKKYYPSLNPTRAVMNNPYNINLEVGPNSMNMPPPSMMQLGLDSSAAAAHNFHLYGRNYINTPDHVAEVTRLLRAGVVPMHQYSHLNFPVSSSSSSPLDGGGFTISGLNLNLGGGASSQQPILRPMPSTTTTTHMAAHQLHDFSSNMISNNSNNVVGYGGGDEVNNPNTNGHGNNNRYNMQGAMDHCVDLDHYWPPSY* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0137 376 ProSiteProfiles NAC domain profile. 26 175 IPR003441 GO:0003677|GO:0006355
Psa6g0137 376 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g0137 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 372 - -
Psa6g0137 376 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 11 372 - -
Psa6g0137 376 Gene3D NAC domain 35 179 IPR036093 GO:0003677|GO:0006355
Psa6g0137 376 MobiDBLite consensus disorder prediction 1 28 - -
Psa6g0137 376 SUPERFAMILY NAC domain 21 175 IPR036093 GO:0003677|GO:0006355
Psa6g0137 376 Pfam No apical meristem (NAM) protein 27 154 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0137 Psa-Chr6 4063387 4065500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0137 22 373 NAC Transcription Factor Family AT2G24430 49.171 4.26e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa6g0137 NAM 4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0137 - - lja:Lj1g3v2035130.1 436.417