Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0130 ATGGCAGGTTTCTTCTCTCTAAGCAGTGGAAGAGGAAAAGAAGAAGCAAGAGAACAAGAAGAAAATAATAACAGTGGAAACACTAATAATCAGTTTCTCTTCAGAAACGAAGAGATCTACAACAACAAAGGATTCGAGATATGGCCGCAACCACAACAATCTTCTTTTCATCATCAACAAAATCTTAACAACTTTTACTCCTTCGGTGTTGGTGGTGGAGGTGGAGGTGGAAGCAGTAGTAGAAGAAACGAAAACAATTTAAACGACGATGTTTCCGTTTCGTTTTCCGATGAATCAACTAGATTTGGATTAACAGTGATGAGGTCTTCCGGCGGTGGTTTAAGCGGCGGTGGAATGAACTGCCAAGATTGCGGTAACCAAGCGAAGAAAGATTGTCCTCATCTTAGATGCAGAACTTGTTGTAAGAGCCGAGGGTTTCAGTGTCAAACTCATGTTAAAAGTACTTGGGTTCCCGCCGCGAAACGCCGTGAACGGCAGCATCAGCTTTCATCTTTGCAGCAACAAAATCAGCACCAGCAGCAGCAACAACAACAACAGTTTCATTCCTCACGACGACACAGAGAAAATCCAAACGATACTTCTGCAGGAGGAGCTTCTGGTTCTCTTGCTTGTACTCCAATACCTATCACTACCACAGTGAGTGCAATGGATGCACAGGATGAACGTTACGCTTATCAAACTGCTGTGAACATAGGAGGACGTGTTTTCAAGGGAATTCTCTATGATCAAGGACTTGAAAGTAGTTACACTGGTGTAAATGCTGGTGGTGGAAGTGGTGGTGGTGGTGGTGGTGAGGGTTCTTCTGGTGGTGGCGGCGGTGAAGGAAATCAACAGAATCTGATAACAACCACCACAACAAATGTTAACAATCCATTTGAATACTCATCACTTTATCCAGCACCTCTTAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 975 0.4379 MAGFFSLSSGRGKEEAREQEENNNSGNTNNQFLFRNEEIYNNKGFEIWPQPQQSSFHHQQNLNNFYSFGVGGGGGGGSSSRRNENNLNDDVSVSFSDESTRFGLTVMRSSGGGLSGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQHQLSSLQQQNQHQQQQQQQQFHSSRRHRENPNDTSAGGASGSLACTPIPITTTVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLESSYTGVNAGGGSGGGGGGEGSSGGGGGEGNQQNLITTTTTNVNNPFEYSSLYPAPLNAFMAGTQFFPPPRS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0130 324 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 322 - -
Psa6g0130 324 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 218 252 IPR006511 -
Psa6g0130 324 Coils Coil 162 182 - -
Psa6g0130 324 MobiDBLite consensus disorder prediction 169 187 - -
Psa6g0130 324 Pfam Domain of unknown function (DUF702) 118 253 - -
Psa6g0130 324 MobiDBLite consensus disorder prediction 1 32 - -
Psa6g0130 324 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 322 IPR007818 GO:0003700|GO:0006355
Psa6g0130 324 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Psa6g0130 324 MobiDBLite consensus disorder prediction 161 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0130 Psa-Chr6 3906949 3908414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0130 1 323 C2H2 Transcription Factor Family AT1G19790 41.176 1.97e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Psa6g0130 DUF702 4.9e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0130 - - gmx:100807290 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0130 6 3906949 3908414 Psa5g0347 5 24998229 25000390 PCT