Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0127 ATGAAGATCCAGTGCGACGTTTGCAACAAAAACGAAGCTTCATTATTCTGCACCGCCGATGAAGCCGCCTTATGCAACGACTGCGACCACCGTGTCCACCACGCCAACAAACTAGCCTCCAAACACCACCGTCTCTCTCTTCACAGTCCTTCTCCTAAACAACACCCTCTCTGTGATATCTGCCAGGAGAGAAGAGCTTTTGTGTTGTGTAAACAAGATAGAGCGCTTCTGTGTAAAGATTGTGATTCATCTATTCATTCTGTTAACGAACTTACTCAGAAACATGATAGGTTTCTTCTCACTGGTGTTAAGCTTTCAACTACTAGTACTAACTCTCCATCTTCGTCATCAACAACAACAACTACTAATTCTAAGTCGAATCTTGTTCCTTCTTCTTTGATTGAAAAATCAAGTACTATATCACAAACTTCAACTCTCAAAAACGTAGCCATGGAAGAAGAAGAAGAAGGAAGTGGTGGTTCAAGTATTTCTAAGTACTTGATTGAGACTCTACCTGGTTGGCAAGTTGATGATTTTCTAGATTCTTCTTCTGTTCCCTTTTCTTTCGCTAAGGGTGATGAATTGTTTGAAGAAAATCTTGATTCATTTTTTCCTAATAGTAATATTGGGATCTGGGTTCCTCAAGCACCACCACCTTCTCTATATTCTTCTTCACAGATAATGATGATGGGTCAGAGTGAGACCAAGAAAAACAGCAACAACAAAAGCAGCATCAACAGATCAAGGTTGAGGGATGATGGTAACATTTTCACAGTTCCACAGATTAGTCCTGGTTCCAATTCCAAGAGAACAAGATATCTATGGTAG 828 0.4022 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRALLCKDCDSSIHSVNELTQKHDRFLLTGVKLSTTSTNSPSSSSTTTTTNSKSNLVPSSLIEKSSTISQTSTLKNVAMEEEEEGSGGSSISKYLIETLPGWQVDDFLDSSSVPFSFAKGDELFEENLDSFFPNSNIGIWVPQAPPPSLYSSSQIMMMGQSETKKNSNNKSSINRSRLRDDGNIFTVPQISPGSNSKRTRYLW* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0127 275 MobiDBLite consensus disorder prediction 109 128 - -
Psa6g0127 275 SMART bboxneu5 53 100 IPR000315 GO:0008270
Psa6g0127 275 SMART bboxneu5 4 47 IPR000315 GO:0008270
Psa6g0127 275 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 272 - -
Psa6g0127 275 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Psa6g0127 275 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Psa6g0127 275 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Psa6g0127 275 CDD Bbox1_BBX-like 57 100 - -
Psa6g0127 275 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Psa6g0127 275 CDD Bbox1_BBX-like 5 47 - -
Psa6g0127 275 Gene3D Classic Zinc Finger 1 96 - -
Psa6g0127 275 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0127 Psa-Chr6 3748932 3751167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0127 1 275 C2C2-CO-like Transcription Factor Family AT1G75540 43.844 7.49e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Psa6g0127 zf-B_box 6.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0127 - - lja:Lj5g3v0165540.1 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0127 6 3748932 3751167 Psa5g0327 5 23305529 23306747 PCT