Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0109 ATGGTGTCCGGATCAGGAGCCTGCGCAAAGAGAGTCGTGGTTGACGCTCGTCACCACATGCTCGGCCGTCTTGCCTCCATCGTCGCCAAGGAGCTTCTCAATGGTCAGAAGGTCGTTCTCGTTAGGTGTGAGGAAATTTGCATCTCCGGTGGTCTCGTTAGACAGAAGATGAAGTACATGCGATTCCTTCGTAAGCGTATGAACACCAAACCCTCTCATGGTCCTATTCACTTTCGTGCTCCATCCAAGATCTTTTGGCGCACTGTTCGTGGAATGATTCCACACAAGACCAAGCGTGGCGAGGCTGCACTTGCTAGGTTGAAAGTATATGAGGGAATTCCTCCACCATATGACAAGATCAAAAGGATGGTGGTACCTGATGCACTTAAGGTATTGAGGCTTCAAAAGGGCCACAAATACTGCTTGCTTGGGCAGTTATCATCTGAGGTGGGATGGAATTACTACGACACCATCAAGGAGTTGGAGAAGAAGAGGAAGGAGCGTGCTCATTTGGCCTATGAGAAGAAGAAGCTCCTCAACAAATTGAGGACTAAAGCCGAAAAGATTGTTGATGACAAACTTGCTCCACAACTTGAAATCCTTGCTCCTGTCAAGTACTGA 621 0.4815 MVSGSGACAKRVVVDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKIKRMVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERAHLAYEKKKLLNKLRTKAEKIVDDKLAPQLEILAPVKY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0109 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Psa6g0109 206 TIGRFAM L13_A_E: ribosomal protein uL13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Psa6g0109 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Psa6g0109 206 PANTHER 60S RIBOSOMAL PROTEIN L13A-4 1 206 - -
Psa6g0109 206 PANTHER RIBOSOMAL PROTEIN L13 1 206 IPR005822 GO:0003735|GO:0005840|GO:0006412
Psa6g0109 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Psa6g0109 206 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Psa6g0109 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Psa6g0109 206 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Psa6g0109 206 Coils Coil 161 181 - -
Psa6g0109 206 Gene3D - 156 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0109 Psa-Chr6 3411263 3413567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0109 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 87.864 5.38e-137 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0109 K02872 - gmx:100813340 385.571