Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0102 ATGTCGGAATTTGATTTATTTGTAGAGGGAGATTTGTTCAAAGCACCCGAGACGATTATGGAAGAACCGGAGATGGACCTTGATCCAATGCAAGCAGCCATGTCAATGATATCTTGTGGCGAAGATATGTCGTCACAGGGTCTAAAATCTTCGGATATTGATAATGTACTTCAAAATGAACAGCTTTTAAGTGAGGTATACTATGAGTGCAAGAAAGATCTCTTGGAAAAGGCAAATATAGAGTCACCTCTATCTGAAATTCTTGAAATCAAGGTTCCTGCTCTGAACATCGAAGAGAATTCGGTTCAAGAAAACAAACCAATTCCTGATGTGCTATTACCAAAGAGTGTTAGTTCGGGAAGTTTGAGCTCAATGGATTGGATGCATGGAGCTGCAATGAAGCCTGCCTTCCTTGATTTCCCTGGAATTGATTTCAACTCGGTTTATGGCATGCGGAGGGCTTTTAGTGAAGGAGATATAAAGACTCTTGGAAATGGTAACATGAGTGTTGGCCAATCTACTCTTGAGAGGCCTTTTCTTCACAGCAACTGCACGAGTGAGCAACGTCAAGAAAAACTCTCTAGATATAGGAATAAGAAGACAAGGAGAAACTTCGGGAGGAAAATAAAGTATGCTTGCAGGAAGGCACTGGCTGACAGTCAACCAAGAATCCGTGGAAGATTCGCGAAAACGGAGGAATCTGATGTCAAGAGGCAATGA 720 0.4181 MSEFDLFVEGDLFKAPETIMEEPEMDLDPMQAAMSMISCGEDMSSQGLKSSDIDNVLQNEQLLSEVYYECKKDLLEKANIESPLSEILEIKVPALNIEENSVQENKPIPDVLLPKSVSSGSLSSMDWMHGAAMKPAFLDFPGIDFNSVYGMRRAFSEGDIKTLGNGNMSVGQSTLERPFLHSNCTSEQRQEKLSRYRNKKTRRNFGRKIKYACRKALADSQPRIRGRFAKTEESDVKRQ* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0102 239 Pfam CCT motif 189 231 IPR010402 GO:0005515
Psa6g0102 239 MobiDBLite consensus disorder prediction 184 205 - -
Psa6g0102 239 PANTHER CCT MOTIF FAMILY PROTEIN 1 237 - -
Psa6g0102 239 ProSiteProfiles CCT domain profile. 189 231 IPR010402 GO:0005515
Psa6g0102 239 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0102 Psa-Chr6 2980326 2984035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0102 164 235 C2C2-CO-like Transcription Factor Family AT5G57660 43.243 2.48e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g0102 CCT 1.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0102 - - gmx:100814332 370.933