Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0099 ATGGTTTCCTTAGAAGAAAAGGTTAAAACTGTTGGAGTTGGAGTTGGAGTTGGAGGAGGACTTGTTGCTGAGATGAAATTGCTTAAGGAAATGCAAGAACATTGTGGGGTGAGAAAGAGTTTGAATTCTGAGCTATGGCATGCTTGTGCTGGTCCTCTTGTGTCTTTACCTCATGTAGGAGGTCTTGTTTATTATTTTCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAACAGCAACTTCACAGATTCCAAACTATCCTAATCTTCCTTCTCAGTTGTTGTGTCAAGTTCAAAATGTCACACTACATGCTGATAAGGAGACAGATGAAATCTATGCTCAAATGACTCTTCAACCATTGAATTCTGAAAAAGAAGTGTTTCCTATATCTGAGTTTGGATTGAACCAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCTAGTGATACAAGCACGCATGGTGGTTTTTCGGTTCCGCGCAGAGCTGCTGAGAAGCTATTTCCTCCATTGGATTACACAATTCAACCTCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACATGGACGTTTCGACATATATATCGAGGTCAGCCGAAGAGACACCTTCTGACAACAGGATGGAGTTTGTTTGTCGGCTCAAAAAGGCTTAGAGCCGGTGATTCTGTTCTTTTTATCAGGGATGAGAAATCACAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACGACATTGCCTTCATCAGTACTTTCTGCCGATAGCATGCACATTGGCGTCCTTGCTGCTGCTGCTCATGCTGCTGCTAATCGAAGTCCATTCACGATTTTCTACAATCCAAGGGCATGTCCTTCAGATTTTGTTATTCCACTGGCGAAATACCGAAAAGCTGTTTATGGGACTCAGCTCTCGGTTGGTATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGATATATGGGAACGATTGTTGGTATCAGTGACGTCGATCCACTAAGGTGGCCTGGTTCTAAGTGGCGAAATGTTCTAGCCGAATGGGACGAGCCAGGGTGTGGTGATAAGCAAAATAGAGTTAATGTATGGGAGATCGAAACTCCCGAAAGCCTTTTTATCTTTCCATCTATGACTTCGAGCCTAAAACGGCCGTTACAACCCGGTTTTTCGGAAAATGAATGGGGAACTTTGTTAAGAAGACCTTTTATTAAAGCACCCGAAAATGGAACAATGGATCTCTCGAACTCGATGTCGAATCTCTACCAAGAAAACATGATGAAGATGATGTATAAACCACAAGTTATCAGCAACAATGGAACATTTTTACCTGTCATGCAACAAGAATATGCTCCTATAAGAGTTCCTTTGCAAGATATGAAGTCTTCGCATGCGATGGAGAATCCGAAAGTTCATCTTTCAACCACAGAGAGCATACCTAATACTAATAATACCTTAAACATGCATTCATTGCTGAGAAGTGATCAACCTGAAAAATTTAACCCTTTGACCAAAACCGAGAAGATGAAAATAGAATCGGAGTCGTTGCCTGATCAAATTTTTGACTTCCCTTCTTTCGAAGCCTGCAACAACATTGAAAAAGCGAATGCGGCGAATCCTGTTAATCCTCAAAGCCTTGCAAACCAATCAACATATCATAATCAAAATCCATTATTATTCGCTCAAACTAGTCCGTGGCCTATTCAGCAGCAGCCTCAGTTAGATTCGTCGATGTTGCATCCTCAACTGATTGATATGGTCCAGCCCGATTCTTCCGTTGTAAACGGCATGCTTCCTCAGATAGACATCGATGAATGGATGATGTATTCTTCTTGCCAACCTCAAGTAGTGAATCCGTCTATACCTTCAATGAACCAAGAAGTTTGGGATCATTATGTCAAGAATTTTAACATGAAGGATCTCTCCGATGAAAGCAATAACCAAAGTGAAATTTGCGTCAATGTCGATGTTAGTAATAGTGTGAATACCACTATGGTCGATCCTTCTTCCACTTCGAACACAATTTTCGACGACTTTTGCACAATGAAGGATAAAGATTTTCAGCATCCTCAAGATTGTATGGTCGGAAACTTAAGTTCTAGTCAAGATGGGCAATCTCAGATAACATCCGCAAGCCTAGCCGAGTCGCATGCCTTTTCACTACGAGACAACTCGGGCGGTACCTCTTCAAGTCATGTTGATTTTGATGAAAGTAGCTTTCTGCAGAACAATAACTCATGGAAGCAAGTAGCTGCACCTATCCGAACCTACACAAAGGTTCAAAAAGCAGGTTCGGTTGGAAGATCGATCGATGTAACTACATTCAAGAACTATCAAGAGCTGATTTGCGCAATCGAATGCATGTTTGGACTAGACGGTTTGCTGAATGACACGAAAGGTTCGGGATGGAAACTAGTATACGTAGATTATGAGAGTGATGTTCTACTTGTTGGAGATGATCCTTGGGAGGAATTTGTGGGGTGTGTTAGGTGTATAAGAATATTATCACCTACAGAAGTTGAACAGATGAGTGAAGAAGGGATGAAGCTTTTAAACAGTGGAGCATTGCTATGA 2607 0.415 MVSLEEKVKTVGVGVGVGGGLVAEMKLLKEMQEHCGVRKSLNSELWHACAGPLVSLPHVGGLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPISEFGLNQSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRANRQQTTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNVLAEWDEPGCGDKQNRVNVWEIETPESLFIFPSMTSSLKRPLQPGFSENEWGTLLRRPFIKAPENGTMDLSNSMSNLYQENMMKMMYKPQVISNNGTFLPVMQQEYAPIRVPLQDMKSSHAMENPKVHLSTTESIPNTNNTLNMHSLLRSDQPEKFNPLTKTEKMKIESESLPDQIFDFPSFEACNNIEKANAANPVNPQSLANQSTYHNQNPLLFAQTSPWPIQQQPQLDSSMLHPQLIDMVQPDSSVVNGMLPQIDIDEWMMYSSCQPQVVNPSIPSMNQEVWDHYVKNFNMKDLSDESNNQSEICVNVDVSNSVNTTMVDPSSTSNTIFDDFCTMKDKDFQHPQDCMVGNLSSSQDGQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYQELICAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVEQMSEEGMKLLNSGALL* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0099 868 ProSiteProfiles PB1 domain profile. 766 850 IPR000270 GO:0005515
Psa6g0099 868 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 866 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa6g0099 868 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Psa6g0099 868 SUPERFAMILY CAD & PB1 domains 767 845 - -
Psa6g0099 868 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Psa6g0099 868 SUPERFAMILY DNA-binding pseudobarrel domain 138 277 IPR015300 -
Psa6g0099 868 PANTHER AUXIN RESPONSE FACTOR 5 27 866 - -
Psa6g0099 868 Pfam Auxin response factor 274 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa6g0099 868 CDD B3_DNA 146 247 IPR003340 GO:0003677
Psa6g0099 868 Gene3D - 312 384 - -
Psa6g0099 868 Gene3D - 762 855 - -
Psa6g0099 868 Gene3D - 144 248 IPR015300 -
Psa6g0099 868 SMART B3_2 147 249 IPR003340 GO:0003677
Psa6g0099 868 Pfam AUX/IAA family 756 851 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0099 Psa-Chr6 2833970 2838327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0099 21 867 B3 DNA Binding Superfamily AT1G19850 59.481 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa6g0099 AUX_IAA 1.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0099 K14486 - gmx:100813003 1376.3