Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0088 ATGTCGAGTGTTCTTGTTGGAGCAGCGTTTCTTTCAGCTTCTTTGGGTGCGTTAATGGAAAAGATTGCTTCTGGTACTAAGCCTGAGGCTGAGCTGTTGGAAAACCTAAATGAAACACTCATGAGCCTTCAATCTAAACTTCACGATGCTGAGGAGAAATGGATCACTAATTCTACGGTCACGGATTGGTTGAATAAGTTGCATGATGTTGTCTACGAAGCTGACGATTTGTTGGACGAAATCAATACTCAAGATTTAAAGTACAAAGTTGAAGCTGATCAGGTTCTTACAAAGTTTTCTTCTTTATTTAAAAGGTTTAACAGAGATATCAATTCTAAACTGCGAAAGTTAATTGAAAAACTGCAACATTTGAGAAATCAAAATCCTGGATTGAATGTACGTGGTTTCTACCGTCTTTGGAATGTAACTCCTACAAATTCTGTTGTGGGAGATGAATCTGCTATTTATGGCAGAGATGATGAAATAAAGATACTTAAAGAGCTTCTGATGTCGGAGGAGGATGGTGGAAGTAAAATAGGAGTGATTTCCATTGTGGGTATGGCAGGATCAGGAAAAACAACATTAGCTAAACTCCTTTACAACGACCATGATGTTAGAGACAAATTTAACTTGAGAGGTTGGACACATATTCCACCAGATCTTGATCTTTTCACCGTCACTAAAACCATTCTCGAGTCTTTCACATCAAAAAGATATGAGACGGATGACCTCAAGATTCTACAGCTGCAATTGCAACAAACTTTATGGGCTAAAAAGTTTTTGCTAGTCTTGGATGATATATGGTATGGAAGATATGTTCATAATCATTGGAATAAGCTAAATGATATTTTTAATCTTGGGAATATGGGGAAAGGCTTAATACCTTATCCCAAAAGTGACAAAACTTGGGAAGAAGTAGCAGAAGAATACTTTGATGAACTAGTGTCAAGGTCTCTGATACGTCAATGCTCTGATGATGATGACAGAAACTTTGAAATGCACGACCTCATCTATGATTTGGCTATGACACTTCCATTTCCATATTGCATTAGGTTGAACAAACATAAGCCGGATAAAAGGGTGCGACAGTTGTCATACAACAGAGCGGAATATGATGAATTTGATGAATTGCATGAATTAAAAGGTCTACAATCATTTTTAGCCATGCCATTGCAAGATTCACCGGTGTCTAACTATTCAATATCAAAGAAGTTACTTTTTGACTTGTTGTCGACAAAGACACACTTACACGTATTGTCTCTTTCACACTACCAAAATATCACTAAGTTGCCCGATTCTATTGGAAATTTGATATACCTGCGATACTTGAATCTCTCTGGCACTCGGATTAAAAGATTGTCTTCTGAAATATGCAAGCTTTACAATTTGCAGTTGATATACCTGCGATACTTGAATCTCTCTGGCACTCGGATTAAAAGATTGTCTTCTGAAATATGCAAGCTTTACAATTTGCAGACGTTGTTGTTGTCAAAATGCTGGGAACTCACTGAATTGCCAAAGGACGTTGGGAAATTGGTGAGCCTACGCCACCTTGACATCAGAGGCACTAAATTGAAGGAAATTCCTGTACAAATATCCACACTAGAAAATCTACAGACATTGTCGGACTTTATAGTCAGCGTGAAGGATGTTGGATTAAAGATCGGAGATCTGGGAAAATATCCTCATCTACGGGGAAGTCTTTCCATCTCACAACTTGAAAATGTAACTGATCCATCCCATGTTTTTGAAGCAAATTTGAAGATGAAAAAAGAAATTGACGAGTTGGAACTAGGATGGTCTTACAATGCTCCTTCTAATTCTCAAATACAAAGTGTTGTTTTGGAACGATTGTGCCCGTCGACAAATTTGAAGGGTCTGATCATCTCCGGATATGGAGGAGACAAATTTCCAAATTGGTTGGGCGATTCTTTATTTGGCAACATGGTGAGATTGAGTATCTCAGATTGTAAAAATTGTTCATGGCTGCCATCGCTCGGGAAACTAAGTAATCTAAAAGAACTCTTCATTAGTAAGATGCAATCTGTAAAGAGTGTTGATTCTGAGTTCTATGGAAGTGGTTCTCCTTCTTTTCAACCATTTCCCTCCTTGAAGACTCTGCGCTTTGACCATATGGACGAGTGGAAGGAATGGGAGCTGATTGGAGGTTCATCTCCAGAGTTTCCTACTCTAACACACTTGTCATTGGGATATTGTCCGAAACTCATAGAAAATATACCATTCGACCTTACCAAGCTTGAATATCTGTCTGTGAAAGTTTGTCCTGAACTCAGAGGGATGACACTCCACAACCTTCCTTCCCTTATTGAACTTGAGTTAACTGAGTGTCCTCTACTGTTTGAGACAAGCCAATTGCCGAGTTGTCTCAATTCTCTTCAAAAGATGACTTTAAAAAACATTCCTTCTTTAACATCCTTTCCGGAAGACGGTCTTCGCAAAACCTTACATTCACTCCGTATTGATTACTGTGAGAATTTGGAGTTCCTTTCTCATGAATCTTTTCACAATTACTCATCACTCGAGCATTTGACTATATCCAATAGTTGTAATCCAATGACTTCATTTACCTTGTGCTCTCTCCCAGTCCTCCAAGTCTATATATCGGTGGCTGCAAACATTTAA 2643 0.3844 MSSVLVGAAFLSASLGALMEKIASGTKPEAELLENLNETLMSLQSKLHDAEEKWITNSTVTDWLNKLHDVVYEADDLLDEINTQDLKYKVEADQVLTKFSSLFKRFNRDINSKLRKLIEKLQHLRNQNPGLNVRGFYRLWNVTPTNSVVGDESAIYGRDDEIKILKELLMSEEDGGSKIGVISIVGMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDLFTVTKTILESFTSKRYETDDLKILQLQLQQTLWAKKFLLVLDDIWYGRYVHNHWNKLNDIFNLGNMGKGLIPYPKSDKTWEEVAEEYFDELVSRSLIRQCSDDDDRNFEMHDLIYDLAMTLPFPYCIRLNKHKPDKRVRQLSYNRAEYDEFDELHELKGLQSFLAMPLQDSPVSNYSISKKLLFDLLSTKTHLHVLSLSHYQNITKLPDSIGNLIYLRYLNLSGTRIKRLSSEICKLYNLQLIYLRYLNLSGTRIKRLSSEICKLYNLQTLLLSKCWELTELPKDVGKLVSLRHLDIRGTKLKEIPVQISTLENLQTLSDFIVSVKDVGLKIGDLGKYPHLRGSLSISQLENVTDPSHVFEANLKMKKEIDELELGWSYNAPSNSQIQSVVLERLCPSTNLKGLIISGYGGDKFPNWLGDSLFGNMVRLSISDCKNCSWLPSLGKLSNLKELFISKMQSVKSVDSEFYGSGSPSFQPFPSLKTLRFDHMDEWKEWELIGGSSPEFPTLTHLSLGYCPKLIENIPFDLTKLEYLSVKVCPELRGMTLHNLPSLIELELTECPLLFETSQLPSCLNSLQKMTLKNIPSLTSFPEDGLRKTLHSLRIDYCENLEFLSHESFHNYSSLEHLTISNSCNPMTSFTLCSLPVLQVYISVAANI* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0088 880 Coils Coil 33 53 - -
Psa6g0088 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 287 IPR027417 -
Psa6g0088 880 PANTHER OS05G0414200 PROTEIN 19 284 - -
Psa6g0088 880 PANTHER OS05G0414200 PROTEIN 289 813 - -
Psa6g0088 880 Gene3D - 140 290 IPR027417 -
Psa6g0088 880 Gene3D - 9 123 - -
Psa6g0088 880 Coils Coil 107 127 - -
Psa6g0088 880 SMART LRR_typ_2 437 460 IPR003591 -
Psa6g0088 880 SMART LRR_typ_2 512 535 IPR003591 -
Psa6g0088 880 SMART LRR_typ_2 465 488 IPR003591 -
Psa6g0088 880 Gene3D Ribonuclease Inhibitor 557 879 IPR032675 -
Psa6g0088 880 Gene3D Ribonuclease Inhibitor 353 467 IPR032675 -
Psa6g0088 880 Gene3D Ribonuclease Inhibitor 468 546 IPR032675 -
Psa6g0088 880 Pfam Rx N-terminal domain 13 95 IPR041118 -
Psa6g0088 880 SUPERFAMILY L domain-like 331 855 - -
Psa6g0088 880 PANTHER DISEASE RESISTANCE PROTEIN RP 19 284 IPR044974 GO:0006952
Psa6g0088 880 PANTHER DISEASE RESISTANCE PROTEIN RP 289 813 IPR044974 GO:0006952
Psa6g0088 880 Pfam NB-ARC domain 161 271 IPR002182 GO:0043531
Psa6g0088 880 PRINTS Disease resistance protein signature 181 196 - -
Psa6g0088 880 PRINTS Disease resistance protein signature 254 268 - -
Psa6g0088 880 PRINTS Disease resistance protein signature 770 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0088 Psa-Chr6 2579534 2582611 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0088 416 541 WRKY Transcription Factor Family AT4G12020 34.646 8.55e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0088 - - pmum:103343409 574.704