Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0085 ATGGACATGGACCTCGATCAAACTTCCCACCGCAACAAAGATGGAAAACCCGTTTTGGTAATCTTAGTTGGACCGCCTGGGAGCGGGAAATCTACCTTCTGTGAAGAGGTTATGCGTTCCTCATCTCGCTCTTGGCTTCGCGTTTGTCAGGACACTATTGGAAATGGTAAAGCAGGAAATAAAGCTCAATGTTTAAGTAGTGCAGCCAGAGGATTAAAGGATGGGAAGAGTGTATTCATTGACAGGTGCAATCTTAACAGAGAACAGCGATCAGATTTTGTAAAGCTTCAGGGTGAAACCCAAATAGATATGCATGCAGTTGTACTTGATCTTCCTGCTAAGCTTTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTAAATAGAATGTTTCAAAATAAAGAGCTGCCCAAATTAAGTGAAGGCTTTAACAGAATAACATTTTGTCAGAGTGAGAGTAATGTCAAAGATGCTATTGATACATACCAAAAACTCGGGCCACTGGATAACCTTTCACATGGCTGCTTTGGTCAGAAAAATCCAGATTCCAAAATCCAATCTAGTATAATAAAATTCCTGAAAAAGGTAGAGGTCCCAGTTGATACTGCATCTAAAGAAAATAGCATTAGAGACTCTAATTCCAAGACTCCTGGGCAAAGTGATCCCCCCTGCAAAGATATGGAAAAAATTCCATCAGCACATGACAATTCCAAGTCAGGGTCAAAGGAAATTGAAGGCCAGGCTGATAAATCTTCCGGTTCCTGTCACAATCAAGTCTCTTTGGATGATACTCCAACTCTGGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAACCATGACAAGGCAGCTGATATTATTGTTGAGAAGGTCACAGAGTACGCAAATAAGGTGGGGAATGCAAGACTTGTTCTAGTTGATTTGACACACAAGTCAAAGATTTTGTCCTTAGTTAAATCCAAAGCAGCAGAAAAGAACATTGACACCCAAAAGTTCTTCACCCATGTTGGAGACATCACTCGCCTTTATTCCACAGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCCAACTGGAGGCTAAAACCTGGTGGTGGTGGTGTTAATGCATCAATTTTTGATGCCGCAGGTCCTGAACTGGAGTCTGCAACCAAAGACAAAGTAAAGACTCTTTCACCTGGGAATGCTGTTGCTGTCCCTTTACCTTCATCTTCTCCTTTGTTCATAAGAGAAGGTGTGACCCATGTAATACATGTCCTTGGACCTAATATGAATCCACAAAGACCAAATTGTCTGAACAATGATTATGAAAAAGGCTGCAAAGTTCTCCAAGATGCTTATGCATCCCTATTTGAAGGTTTTGCATCAATTGTTAAGAATCAGGTACAGCAAAACGAAAACATTGGAAAAAAGTCTCTGGAATTGCAGGATCAGTCTGAACAGCATTCCAGAAATCATTCCCCAAACACTGATCAAAAGAGTAAGAGAGATGCTGATCATGGGTTGGTAAAAAGCAAGAAATACAAGGGAAGTCAAGATGCTTTTGACACAACCTTTACAGGTTCTAGGGATGAAAAGGTAGATTCAGAGCATAAAAGAAGCGACGGGAGTACGAGGAAGGCATGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCACCCTGAAAAGCATAAGGATGGCTTGCTTGAAATTTCAGAAGACATTATTGTTTTGAACGATATGTATCCTAAGGCACAGAAGCATGTTCTGATCTTGGCACGGACTAGAGGTCTTGATTGCCTGTCAGACGTACACAATGAGCACCTTTTGGTGTTGAAAAGGTTGCATGCAGTGGGTTTAAAATGGGCTGAGAAATTCTTAAGCGAGAATGCTTCACTGGTATTTCGCCTTGGATATCACTCGGTTCCGTCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGAATCAAAACATTTGAAGAATAAGAAGCATTGGAACTCGTTTAACACTGCATTCTTTCGTGACTCGGTGGATATAATTGATGAGGTATCTAATCATGGAAAAGCAACATTGAAAGATGACGACAAGCTACTGTCTATGGAGTTGAGGTGCCACAGATGTAAAAGTGCGCATCCAAACATACCCCGCTTAAAATCACATATTAGTAGCTGCCAATCACCCTTTCCTGCTTTCCTACTTGAAAACGGGCGATTGGTTGGTGCATGA 2259 0.4139 MDMDLDQTSHRNKDGKPVLVILVGPPGSGKSTFCEEVMRSSSRSWLRVCQDTIGNGKAGNKAQCLSSAARGLKDGKSVFIDRCNLNREQRSDFVKLQGETQIDMHAVVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMFQNKELPKLSEGFNRITFCQSESNVKDAIDTYQKLGPLDNLSHGCFGQKNPDSKIQSSIIKFLKKVEVPVDTASKENSIRDSNSKTPGQSDPPCKDMEKIPSAHDNSKSGSKEIEGQADKSSGSCHNQVSLDDTPTLAFPSISTSDFQFNHDKAADIIVEKVTEYANKVGNARLVLVDLTHKSKILSLVKSKAAEKNIDTQKFFTHVGDITRLYSTGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKDKVKTLSPGNAVAVPLPSSSPLFIREGVTHVIHVLGPNMNPQRPNCLNNDYEKGCKVLQDAYASLFEGFASIVKNQVQQNENIGKKSLELQDQSEQHSRNHSPNTDQKSKRDADHGLVKSKKYKGSQDAFDTTFTGSRDEKVDSEHKRSDGSTRKAWGSWAQALHQIAMHPEKHKDGLLEISEDIIVLNDMYPKAQKHVLILARTRGLDCLSDVHNEHLLVLKRLHAVGLKWAEKFLSENASLVFRLGYHSVPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDIIDEVSNHGKATLKDDDKLLSMELRCHRCKSAHPNIPRLKSHISSCQSPFPAFLLENGRLVGA* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0085 752 Pfam Scavenger mRNA decapping enzyme C-term binding 564 675 - -
Psa6g0085 752 Gene3D - 557 738 IPR036265 -
Psa6g0085 752 Pfam AAA domain 19 128 - -
Psa6g0085 752 PANTHER APRATAXIN-RELATED 16 751 - -
Psa6g0085 752 MobiDBLite consensus disorder prediction 215 269 - -
Psa6g0085 752 PANTHER APRATAXIN 16 751 IPR026963 GO:0003677|GO:0006281|GO:0033699
Psa6g0085 752 Gene3D Leucine Aminopeptidase, subunit E, domain 1 336 479 IPR043472 -
Psa6g0085 752 SUPERFAMILY Macro domain-like 325 465 IPR043472 -
Psa6g0085 752 Gene3D - 2 176 IPR027417 -
Psa6g0085 752 SUPERFAMILY HIT-like 553 719 IPR036265 -
Psa6g0085 752 Gene3D Leucine Aminopeptidase, subunit E, domain 1 250 335 IPR043472 -
Psa6g0085 752 MobiDBLite consensus disorder prediction 217 232 - -
Psa6g0085 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 163 IPR027417 -
Psa6g0085 752 MobiDBLite consensus disorder prediction 488 553 - -
Psa6g0085 752 Pfam Macro domain 367 447 IPR002589 -
Psa6g0085 752 ProSitePatterns HIT domain signature. 644 662 IPR019808 -
Psa6g0085 752 ProSiteProfiles Macro domain profile. 332 598 IPR002589 -
Psa6g0085 752 MobiDBLite consensus disorder prediction 488 524 - -
Psa6g0085 752 MobiDBLite consensus disorder prediction 239 257 - -
Psa6g0085 752 MobiDBLite consensus disorder prediction 532 551 - -
Psa6g0085 752 Pfam C2HE / C2H2 / C2HC zinc-binding finger 680 733 IPR032566 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0085 15 751 C2H2 Transcription Factor Family AT5G01310 57.104 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0085 K10863 - gmx:100786762 1172.15