Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0044 ATGGGACGTGAAAGAATATCTATGAAACTAATTCAAAACGAGAAATCAAGAAAGACAACATTTCAGAAGAGAAAGAAGGGCTTATTGAAAAAAGCGAATGAACTTTCCATTCTTTGTGATGTTGATGTTTGTGTGATTCTCTATGCACCCAACTTTGAAGGTGAAGGATTTGCAGAACCTGAAACATGGCCTAAAGACACAAACGAGGTACAAAGGATTCTTCAAAAATACTATAACACAACAGTCGATAGACGTCATAAGGTTTATCATCTTCAAGAATATTTCCAAGAAAGGTTGAAGAAAGTTGCGTTTGAGATTTCGAAAGTGCGAAAACAAAGGCTAAAGATCATGTATCCAACTTGGGATGAAGCTTTTGATTCTCTTAGAGGGAATGAATTGAAGTCACTTATTAGCACATTGGATTCTAGGTATGATTCTTGCTGTCAAAAGATGGATTTTCTTAACGGAAAAGCGAATATGGAACAATCACATCCTAGTACTTCTATTTTAATCTCAAATCCAAGTAGCTACTTGAATCCATTTGTAAACAACATGTTTCAAGAGGGACAATGCTCTCAACCTTCTTCGATGAGTGCACAAGCTTTCTATCAGCCACTTCAATTAGGACAATGCTCTCAACCTTCTATGGTGTTTTCGAGTGCACAAGAATTCTATCCGTCACTACAATTAGGAGAAAGTGTTGAACCTTTTTCGATGATTCCAAGTTCACAAGCCTCTTATCATCCACTTCAATTAGGACAAAGCGCTCAACCTTGTTCGATGATGCCAAATGCACAAGCCTCTTATCATGTGGAGCCTGAGCCTGAGCCTGATGAGTCTTATCCTTATGAACATATTGGAGCTGGTCGAAACTTGTCACCATACTATTACAAAGGGAACACATCAATGCAATCACATCCTGATCATGTGCAAACTCTTCCTTTCCAGAATATTCCAAATCTGCCACATGGATTTCAGCATAATGGAATCACTGATATGGATGTTCTTCAAGCTGATATGTTCAACTACAAGGATGAAAGGAATTAG 1047 0.3792 MGRERISMKLIQNEKSRKTTFQKRKKGLLKKANELSILCDVDVCVILYAPNFEGEGFAEPETWPKDTNEVQRILQKYYNTTVDRRHKVYHLQEYFQERLKKVAFEISKVRKQRLKIMYPTWDEAFDSLRGNELKSLISTLDSRYDSCCQKMDFLNGKANMEQSHPSTSILISNPSSYLNPFVNNMFQEGQCSQPSSMSAQAFYQPLQLGQCSQPSMVFSSAQEFYPSLQLGESVEPFSMIPSSQASYHPLQLGQSAQPCSMMPNAQASYHVEPEPEPDESYPYEHIGAGRNLSPYYYKGNTSMQSHPDHVQTLPFQNIPNLPHGFQHNGITDMDVLQADMFNYKDERN* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0044 348 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa6g0044 348 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa6g0044 348 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa6g0044 348 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Psa6g0044 348 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa6g0044 348 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Psa6g0044 348 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Psa6g0044 348 PANTHER MADS BOX PROTEIN 4 208 - -
Psa6g0044 348 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa6g0044 348 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa6g0044 348 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 4 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0044 Psa-Chr6 1381461 1383311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0044 1 168 Type I MADS-box Gene Family AT5G55690 37.870 6.84e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g0044 SRF-TF 2.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0044 - - mtr:MTR_1g114730 288.5