Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0039 ATGGCCACCCAAATGAGTAAGAAGAGAAAGTTTGTTGCCGATGGAGTTTTCTTTGCTGAATTGAACGAGGTTTTGACTCGTGAACTTGCTGAAGATGGTTACTCTGGTGTTGAGGTTAGGGTTACCCCAATGCGCACTGAGATCATTATCAGAGCTACTCGTACCCAAGCCGTTCTAGGTGAGAAAGGAAGGAGGATTAGAGAACTCACCTCAGTTGTTCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAACTTTATGCTGAGAAGGTTAACAATAGAGGACTTTGTGCTATTGCTCAGGCTGAATCTCTGCGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTGGTGCAAAGGGATGCGAGGTCATTGTCAGTGGAAAGTTGAGGGCCCAAAGAGCTAAATCCATGAAGTTTAAGGATGGATACATGATTTCTTCTGGGCAACCAGTCAAAGATTACATCGACTCTGCAGTTAGACACGTGCTCCTCAGACAGGGTGTTCTTGGTATCAAAGTAAAGATTATGCTTGATTGGGATCCTAAAGGGAAACAGGGCCCTAAAACACCCCTCCCTGATATTGTCACTATCCACACTCCAAAGGAGGAGGAATACAACCCACCTCAGGAATACAACCAACCTCCTCCTGCCGTTTTGGACGCCACTGATATTGCGGTGCCCGTTGCTTAA 729 0.4568 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEYNPPQEYNQPPPAVLDATDIAVPVA* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0039 242 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Psa6g0039 242 CDD 40S_S3_KH 15 95 - -
Psa6g0039 242 Gene3D - 1 91 IPR015946 -
Psa6g0039 242 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Psa6g0039 242 PANTHER RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED 2 222 - -
Psa6g0039 242 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Psa6g0039 242 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Psa6g0039 242 Pfam KH domain 20 93 IPR004044 GO:0003723
Psa6g0039 242 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 2 222 - -
Psa6g0039 242 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Psa6g0039 242 Gene3D - 93 219 IPR036419 -
Psa6g0039 242 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0039 Psa-Chr6 1332777 1335263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0039 1 242 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 85.081 6.91e-151 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0039 K02985 - gmx:100799156 432.565