Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0030 ATGACTCAAGACGAAGAAATGAAGGATCACCCTACACCTTCTCACTCCGTTTCCGCAGCTATTCCTTCTACATTGCATCATTTGAAGGAAATAGCATCAATCATTGAAACTGGTTCAAACTCTAAGGAAGTTCGCAGAATTTCTCGTGCCGTGCGCCTTACTATTGCTTTGAGGTCCAAACTCACAGCTCCGGTTCTCTCATCGTTCATCGATCACGTTCTTCCTACAGCTTCTGAGTCTCATTCTAGGTTATCTTCTTATCTTCCCAATCCCAAGGATGATGATCATGAGATGGAAGTGGATTCTGCAACATCTGCAGCTATTCAAACCCCAGCCAAATACTTGTTGCCTGAGCTAGAAATCTACTGTTACTTCCTTGTGCTTCTTTTTCTTATTGATCAGAAACGATATGAAGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGACCGGCTCAAGAACTTGAATAGAAGAACTGTTGATGTTATAGCCTCAAGACTGTACTTTTATTACTCATATAGCTATGAGCTTACTGGAGATCTTGCTGAAATTCGTGGAAACCTCTTTCAGTTGCACAGGATTGCTACCCTGCGCCATGATGAACTTGGTCAGGAAACACTTCTTAATCTGTTACTACGTAACTACCTCCACTACAACCTATATGATCAAGCAGAGAAGCTGAGGTCTAAGGCTCCGCGATTTGAGGCACATTCAAACCAGCAGTTTTGTCGCTATCTCTTCTACCTTGGGAAAATTCGGACTATTCAGTTGGAGTATACCGATGCCAAGGAGTCTCTCCTGCAGGCTGCTCGTAAAGCACCAGTTGCAGCGCAGGGTTTTCGAATTCAGTGTAACAAGTGGGCCATTATAGTTCGTTTACTGTTGGGAGAAATTCCTGAGAGGACCGTCTTCGTGCAGAAAGGAATGGAGAAAGCTTTGAGGCCATACTTTGAACTTACCAATGCTGTCAGGATTGGTGATTTAGAGCTGTTTCGGAATGTTGCAGAGAAGTATGCCACCACTTTCAAGACAGACGGGACCAATAATTTGATTGTTCGATTGCGTCATAATGTCATTAGGACTGGTTTGCGCAACATCAGTATATCATATTCTCGCATCTCACTTGCTGATGTAGCTCAGAAGTTGAGGTTGAGCTCTGCAGATCCCATTGCTGATGCAGAAAGCATTATATCAAAGGCTATCCGTGATGGAGCAATTGATGCAACATTAGATCATGCTAATAAATGGATGTTGTCCAAGGAAACGGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCTTTAATTCTCGGATTGCCTTCTGTCTTAACATGCACAATGAGGCTGTTCAAGCACTGCGTCATGCCACTTTTTATGGGGGCAGTGATGCCTCAGGCACTATGGGAGGAGCTTGTGGTTACGGAGATCTATATTCAGCGGGATACGGGACAAGAACAGCTGCATTAAGTACTGCTTTGTTTAATGACGGTGCTTCTTGTGGACAATGCTACAAAATCATTTGTGATTTTCTTTCCGACCCAAGATGGTGCGTAAAAGGAAGATCTATAACCGTAACCGCCACAAATTTCTGTCCTCCTAATTATGATCTACCCAATGACAATGGAGGATGGTGCAATCCACCTCTCAAACATTTTGATATGGCTCAACCAGCTTGGCAAAAAATTGGTATCTACCGAGGAGGAATCATCCCTGTCTTATTCCAAAGGGTACCTTGCAAAAAGCATGGAGGAGTAAGATTCAGTGTGAATGGGAGAGACTACTTTGAGTTAGTGTTGATTAGCAATCTTGGGGGTGCTGGATCAATCCAATCTGTTTTGATTAAAGGATCGAAAACAGATTGGATGCCTATGTCAAGAAATTGGGGTGCTAATTGGCAATCCAACTCTTATTTGAATGGCCAATCCTTGTCATTCCAGGTTAAAACCACAGATGGTGAAACAAGAACTTTCGAAAATATTGTTCCTTCTAATTGGGGCTTTGGCCAAACTTTCTCCAGTAGGGTCCAGTTTTAA 2031 0.4298 MTQDEEMKDHPTPSHSVSAAIPSTLHHLKEIASIIETGSNSKEVRRISRAVRLTIALRSKLTAPVLSSFIDHVLPTASESHSRLSSYLPNPKDDDHEMEVDSATSAAIQTPAKYLLPELEIYCYFLVLLFLIDQKRYEEAKACSSASIDRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLGEIPERTVFVQKGMEKALRPYFELTNAVRIGDLELFRNVAEKYATTFKTDGTNNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLSSADPIADAESIISKAIRDGAIDATLDHANKWMLSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVQALRHATFYGGSDASGTMGGACGYGDLYSAGYGTRTAALSTALFNDGASCGQCYKIICDFLSDPRWCVKGRSITVTATNFCPPNYDLPNDNGGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNLGGAGSIQSVLIKGSKTDWMPMSRNWGANWQSNSYLNGQSLSFQVKTTDGETRTFENIVPSNWGFGQTFSSRVQF* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0030 676 Pfam Expansin C-terminal domain 584 661 IPR007117 -
Psa6g0030 676 Pfam Lytic transglycolase 485 572 IPR009009 -
Psa6g0030 676 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 454 - -
Psa6g0030 676 Gene3D - 447 579 IPR036908 -
Psa6g0030 676 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g0030 676 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 593 672 IPR007117 -
Psa6g0030 676 PRINTS Expansin/Lol pI family signature 449 464 IPR007118 GO:0005576
Psa6g0030 676 PRINTS Expansin/Lol pI family signature 467 485 IPR007118 GO:0005576
Psa6g0030 676 PRINTS Expansin/Lol pI family signature 489 507 IPR007118 GO:0005576
Psa6g0030 676 PRINTS Expansin/Lol pI family signature 566 582 IPR007118 GO:0005576
Psa6g0030 676 PRINTS Expansin/Lol pI family signature 620 634 IPR007118 GO:0005576
Psa6g0030 676 PRINTS Expansin/Lol pI family signature 658 672 IPR007118 GO:0005576
Psa6g0030 676 SMART dpbb_1 485 573 IPR007112 -
Psa6g0030 676 SUPERFAMILY PHL pollen allergen 580 672 IPR036749 -
Psa6g0030 676 SUPERFAMILY Barwin-like endoglucanases 454 601 IPR036908 -
Psa6g0030 676 Gene3D - 246 446 - -
Psa6g0030 676 SMART PINT_4 348 441 IPR000717 -
Psa6g0030 676 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 454 - -
Psa6g0030 676 Pfam PCI domain 314 418 IPR000717 -
Psa6g0030 676 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 468 583 IPR007112 -
Psa6g0030 676 Pfam Proteasome regulatory subunit C-terminal 423 454 IPR013586 GO:0000502|GO:0030234|GO:0042176
Psa6g0030 676 Gene3D - 583 676 IPR036749 -
Psa6g0030 676 SUPERFAMILY "Winged helix" DNA-binding domain 351 423 IPR036390 -
Psa6g0030 676 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 348 441 - -
Psa6g0030 676 PRINTS Expansin signature 480 494 IPR002963 GO:0009664
Psa6g0030 676 PRINTS Expansin signature 509 520 IPR002963 GO:0009664
Psa6g0030 676 PRINTS Expansin signature 522 532 IPR002963 GO:0009664
Psa6g0030 676 PRINTS Expansin signature 541 558 IPR002963 GO:0009664
Psa6g0030 676 PRINTS Expansin signature 558 571 IPR002963 GO:0009664
Psa6g0030 676 PRINTS Expansin signature 582 594 IPR002963 GO:0009664
Psa6g0030 676 PRINTS Expansin signature 594 615 IPR002963 GO:0009664
Psa6g0030 676 PRINTS Expansin signature 629 650 IPR002963 GO:0009664
Psa6g0030 676 PRINTS Expansin signature 658 674 IPR002963 GO:0009664
Psa6g0030 676 ProSiteProfiles PCI domain profile. 242 423 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0030 Psa-Chr6 1116135 1122782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0030 454 676 Expansin Gene Family AT4G01630 66.964 1.27e-112 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0030 K03033 - gmx:100814379 765.763