Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0005 ATGGAGATACAGGGTGATAATCTGAATAGTAGCATAGACCCCAGAAGTGGATTTTGCAGTTCCAATTCAATCTTCTACAGCAAGAGGAAACCTCTCTCCCTTCCTCCAAACCACTCCTTACATGCCACCACTTTTATTTCCTCCCGTGCCCATCACGGCAACATCGCCTTCATCGACGCCTCCACCGGCCGTCAATTCACCTACCAACAACTCTGGCGAGCTGTCGATTCTGTCACCTCCTCACTCTCCACCATGGGAATCAGAAAAGGTGATGTCATCCTCCTTCTCTCTCCCAACTCCATCTACTTCCCTATCGTGTGTCTCTCTGTCATGTCCCTCGGCGCCGTCATCACTACCACTAATCCTCTCAACACAACAAGCGAAATTGCAAAACAGATAGCCGATTCCAAACCTGTCCTCGCCTTCACAACCTCTCAACTCGTTTCCAAAATCACCGGAGCATCGCCCTCACTCCCAATTATTCTCATGGAAACCGAACGTAACTCATCATCAACAAACACACTGGAGAAAATGATGGAGAAAGAACCGGAGTTGAGTAGATTGAGTAGAGTGAGTGAGCGAGTCAACCAGGACGACACGGCCACTCTACTTTACTCTTCCGGAACTACTGGACCCAGCAAAGGAGTAGTATCTTCCCACAAGAACCTGATAGCGATGGTTCAAATAGTAATGTCTAGGTTCAGTAAAGAAGAAGAGGATCATGGAGAAACATTCATATGCACGGTTCCAATGTTTCATATATACGGTCTTGCGGTGTTCGCTACGGGGCTTCTGGCATTGGGTTCAACCATCGTTGTTCTCTCCAAGTTCGAGATGCATGACCTGCTTTCATCCATTGAGAAATTCAGATCCTCGTTCTTACCGCTGGTGCCGCCCATACTGGTTGCTATGCTGAACAACGCAGATGCGATTAATAGCAAGTACGATTTGAGTTCCCTTCACACGGTTCTCTCCGGTGGAGCTCCTCTGAGTAAACAAGTTACGGAAGGATTTATTGAAAAGTATCCTAATGTTAAGATCCTTCAGGGTTATGGTCTGACAGAATCCTCTGGAGTTGGGTCATCCACGGAATCTTTGGAAGAGAGTCGTAGGTACGGTACGGCTGGGCTAGTGTCTTCTTCGACGGAGGCTATGATTGTTGACACTGAAACTGGTCAACCGCTACCGGTTAACCGGACCGGTGAGCTTTGGCTTCGGGGTCCCACCATCATGAAAGGTTATTTTAGCAATGAGGAGGCAACAACATCAACTATTAATCCAGAGGGTTGGTTAAGAACAGGAGATGTATGCTATATTGATAATGATGGATTCTTATTTGTGGTGGATCGCCTGAAAGAGCTCATCAAATACAAAGGATATCAGGTTATAATTAGATTCAACACTTTCACTCACATAGTTGTGTAG 1425 0.4646 MEIQGDNLNSSIDPRSGFCSSNSIFYSKRKPLSLPPNHSLHATTFISSRAHHGNIAFIDASTGRQFTYQQLWRAVDSVTSSLSTMGIRKGDVILLLSPNSIYFPIVCLSVMSLGAVITTTNPLNTTSEIAKQIADSKPVLAFTTSQLVSKITGASPSLPIILMETERNSSSTNTLEKMMEKEPELSRLSRVSERVNQDDTATLLYSSGTTGPSKGVVSSHKNLIAMVQIVMSRFSKEEEDHGETFICTVPMFHIYGLAVFATGLLALGSTIVVLSKFEMHDLLSSIEKFRSSFLPLVPPILVAMLNNADAINSKYDLSSLHTVLSGGAPLSKQVTEGFIEKYPNVKILQGYGLTESSGVGSSTESLEESRRYGTAGLVSSSTEAMIVDTETGQPLPVNRTGELWLRGPTIMKGYFSNEEATTSTINPEGWLRTGDVCYIDNDGFLFVVDRLKELIKYKGYQVIIRFNTFTHIVV* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0005 474 Pfam AMP-binding enzyme 49 457 IPR000873 -
Psa6g0005 474 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 462 - -
Psa6g0005 474 CDD 4CL 34 462 - -
Psa6g0005 474 SUPERFAMILY Acetyl-CoA synthetase-like 34 462 - -
Psa6g0005 474 ProSitePatterns Putative AMP-binding domain signature. 203 214 IPR020845 -
Psa6g0005 474 PANTHER 4-COUMARATE--COA LIGASE-LIKE 3-RELATED 12 462 - -
Psa6g0005 474 Gene3D - 22 453 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0005 Psa-Chr6 336316 340525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0005 10 474 Monolignol Biosynthesis Gene Families AT1G20510 69.807 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0005 K10526 - gmx:100811344 689.108