Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0004 ATGGAGGGTCAATCTTCGAATGAAGGCTCCACTTCCACCAATGTTTCACCACACTCTTCTGATTCAACTGTTGAGCTCAATATCAAAACTTTAGATTCCCGCAACTACACTTTTCAACTTCAAAAAAATATGCCCGTTTCCTTGTTCAAACAAAAAATTGCTGATCAAATTGGTCTACCCGTTCATCAGCAGCGCCTCATATTTAGAGGAAAAGTCTTGAAGGATGAACATCTTCTTTCTGACTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAGCCAAATCCGCCGCAGACTTCTGCTTCGGATTCTGTTGAGACAACTAATACAAACAGTAGCCGAGGAAACGATGCTGGATCAGGAGCTCCTCGTAACCGTGTTGGCCAAATTTCACACAGCGTGGTTCTTGGGACTTTTAATGTGGGGGAACAGGTTGAAGGCACTGCGCAAGACCTTACTAGGGTTATTGGGGCAGTTTTGAATTCTATTGCCAATGGGGGCCAGAGCACAATTAATCTTCCTAATTCCACTCAACATACTTCAGCTCCACCGGGGAATGAAACTGAAGGAAATCAAAACCTAGCCGGAAATCAGGCACCGTCTGGACAGACATTTCCTGGTTTGGCATTCCAACCTATGCCTCATGTTGTTCAGATTCCTACTGTCGCAGGAGCAATACCCATTCCTTCTTTCAATGCACCAATTCCTGATTCACTGAACACTTTGTCTGAGTTCATAAATCGCATGGAACAGATACTTTCACAAAACGGTTATGGGCCAAATATATCTTCAACTAACTCTGGAGATCAACGGGTAGAATTGGCTTCCAATACACAAGGGTTGCCAACACTTGAAGCATTGACCACTGTATTGCATCGTGCAGAACAGTTGCTTGGTGGTCAAGCTGTTTCTGCGCTATCTCATATTGCAGGACGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTGTAAGAGGTCAAATACAGTCTGAGTCAGTACAGATAGGAATTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTAGGCCGAACTATGTTAACACTGCGAATGGGACGATCTTCTGCAGAATCTGTTGTTAATTCTGGACCAGCAGTTTATATTTCTCCATCAGGACCAAATCCTATAATGGCGCAGCCATTTCCACTCCAGACAAGTTCCCTGTTTGGCGGTCCACTTTCTTCTTCAACTCCTGCAACTTTAGGCACAGTTGGCGTTGGAACTGCTCCTAGGAACGTGAACATTCACATACATGCTGGTACCTCTCTTGCACCAATTGTTTCAGCCATTGGCTCTAGATCAAATAATGGGGAAGGGACAAGGACTGAACACCGTAGTGAGTCTGGTTCCAGTGATTCAGGGGAAATTCATTCTCGCCTTAGAAACTCTGTTGGTAATTTGCAAGGAGATAACACAGTTCTGTCAGGCCAAACACAATCAACTAACAGGGACCTGTCATCTGGATCTGAACTAAGACCTGCACAGGTAAATGAACAGAGAGATACAGTGGAGATGAATGAACGTGGGGCTACCGGTGCATCTTCAGTTGGTTGCACTTCTGAAAGTGGAGCAGAGAAGCCCCAAACTGAGGCAATCAAAACCTGTAGTAATGACGAGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAATCAAGATTTACAAAGTTCTTCTAGTGGAGAAACCATGGTAAAATCAGAAAAAGTACAGGATGCTCCATCTGCAAGTGAAAGACGAGATGTAACTGAACCTGCCAAAACTGCTCCTCTTGGACTGGGTATGAGTGGTTTGGAGCGTAAGAGACGGACCAAACTTCAACCTCCTGTAGGTAAAGGTGCTGGTGATGGATCCTCCAGTTCTTCCATCAATCAAAGTCTGGAAACAAGGACAGATAGTCAAAATATATTGCAAACACCCGCTGGCCAAGAATCAGCTGTTCATTCGATAAATGGGGATAGGCCATCATCTCAGCGTCCCATGCCCCCCGGTGGTAGTCAGATTGATGTGGCAGGTTTAATGTCTCAGGTTCTACATAGTCCTGCTTTGAATGGTTTGTTGGAAGGGTTTTCACATCAAACCGGAGTTGACTCACCTGATGGCTTAAGGAACATGTTGCAACAGTTCACACAAAGCCCACAGATGATGAACACAGTCAATCAGATTGCCCAGCAGGTTGACAGTCAGGGTATGGGAAATATGTTATCTGGAATGGGAAGAGGGCAGGGTGGTGGCATGGACTTCTCAAGGATGTTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGAGGGGGAAATCCTCCATCACCATTCTCTGCTGCAGAACCAGAAACCCTTGCACCCTACAGGAATGAAAATTCTGATAATCAAAACTTACAGCCTGATCTTCGACCAGTGGTAGAGAGGATTGATCGCCTGAGTCCACCTGCAGACATCTTCCGTGCTGTAGCTGAAAATGCTGTCCAGCAGTCTGGCAGTGGAAGTGCTTCCGATGATCTTCTGGATGAGTTATGTTGCAATGAAAGTCTTGCCAGTGAATATTTGGAGATGTTGCGACATGATGTAGGTCAGTTGTTTGAAGGACGTTCCAAGAGGGACAAGTCCTAA 2643 0.451 MEGQSSNEGSTSTNVSPHSSDSTVELNIKTLDSRNYTFQLQKNMPVSLFKQKIADQIGLPVHQQRLIFRGKVLKDEHLLSDYHVENGHTLHLVERQPNPPQTSASDSVETTNTNSSRGNDAGSGAPRNRVGQISHSVVLGTFNVGEQVEGTAQDLTRVIGAVLNSIANGGQSTINLPNSTQHTSAPPGNETEGNQNLAGNQAPSGQTFPGLAFQPMPHVVQIPTVAGAIPIPSFNAPIPDSLNTLSEFINRMEQILSQNGYGPNISSTNSGDQRVELASNTQGLPTLEALTTVLHRAEQLLGGQAVSALSHIAGRMEREGTSADLGVRGQIQSESVQIGIAMQHLGALLLELGRTMLTLRMGRSSAESVVNSGPAVYISPSGPNPIMAQPFPLQTSSLFGGPLSSSTPATLGTVGVGTAPRNVNIHIHAGTSLAPIVSAIGSRSNNGEGTRTEHRSESGSSDSGEIHSRLRNSVGNLQGDNTVLSGQTQSTNRDLSSGSELRPAQVNEQRDTVEMNERGATGASSVGCTSESGAEKPQTEAIKTCSNDERDVLVDKFVSSSSNQDLQSSSSGETMVKSEKVQDAPSASERRDVTEPAKTAPLGLGMSGLERKRRTKLQPPVGKGAGDGSSSSSINQSLETRTDSQNILQTPAGQESAVHSINGDRPSSQRPMPPGGSQIDVAGLMSQVLHSPALNGLLEGFSHQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIAQQVDSQGMGNMLSGMGRGQGGGMDFSRMFQQMMPIVSQALGGGNPPSPFSAAEPETLAPYRNENSDNQNLQPDLRPVVERIDRLSPPADIFRAVAENAVQQSGSGSASDDLLDELCCNESLASEYLEMLRHDVGQLFEGRSKRDKS* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0004 880 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Psa6g0004 880 MobiDBLite consensus disorder prediction 443 674 - -
Psa6g0004 880 MobiDBLite consensus disorder prediction 625 674 - -
Psa6g0004 880 MobiDBLite consensus disorder prediction 465 510 - -
Psa6g0004 880 Gene3D - 12 108 - -
Psa6g0004 880 CDD Ubl_ubiquitin_like 26 93 - -
Psa6g0004 880 MobiDBLite consensus disorder prediction 556 577 - -
Psa6g0004 880 PANTHER OS07G0498800 PROTEIN 4 878 - -
Psa6g0004 880 MobiDBLite consensus disorder prediction 92 128 - -
Psa6g0004 880 MobiDBLite consensus disorder prediction 1 23 - -
Psa6g0004 880 SMART ubq_7 24 95 IPR000626 GO:0005515
Psa6g0004 880 MobiDBLite consensus disorder prediction 448 464 - -
Psa6g0004 880 MobiDBLite consensus disorder prediction 173 193 - -
Psa6g0004 880 MobiDBLite consensus disorder prediction 95 122 - -
Psa6g0004 880 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 4 878 - -
Psa6g0004 880 SUPERFAMILY Ubiquitin-like 12 112 IPR029071 -
Psa6g0004 880 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Psa6g0004 880 PRINTS Ubiquitin signature 34 54 IPR019956 -
Psa6g0004 880 PRINTS Ubiquitin signature 55 75 IPR019956 -
Psa6g0004 880 PRINTS Ubiquitin signature 76 97 IPR019956 -
Psa6g0004 880 MobiDBLite consensus disorder prediction 518 541 - -
Psa6g0004 880 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0004 Psa-Chr6 261043 272293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0004 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 3.61e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0004 - - gmx:100783611 1205.28