Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g7094 ATGAAGAAGAACCACCAAAACCAAAACCTTAACCTCGGTGGCATGTTTTCAAATCCCCTCAGCGAGATCCAAACCAATAGTACTCGTCGTAGTTGCAGCAACGTAACAGACAACAAAGAAAACACCAATGCCAATGTTGTTCCTTCTCTTCCAAAATCCAAATCATTCTCAACCAGAATCGTGAAGCCTTCTTCGTTACAGTTCTGCATGCAAATCAACGATTCTTCTCATTTTTCAAACTCTCTCAAAATCTGGGACTACTCTGATTCTGAAGCAGCTCCTGCTTCCTCTTGGTCCACTTTACCTAACAAGTCTTTGATTTGTAGACCTTTACCTATAGATATTGGAAGATGTACATGTGTAATTGTCAAAGAACCAACCCCTCAGGGTCTCTCTGCAACCACCTTCTTCTCTCTATATACCTACGAAGGTCAGGGACGGCAGAATAGGAAACTGGCTGTAGCCTGCCACAACCGCCGGAGAAATGGAAGATCACAGTTCACAGTAGCTCAGAATGTAAAAGGATTACTCTCTTGTTCCGACGAAACTTTCCTCGGCACAGTAACAGCGAACCTCACCGGCTCAAAATACAACATTTGGGATCAGAAACATTGTCCTAATTCCAAATCCAAAAGTAATCAACCAAATTCAAAGCAGCCTCTTGCTGTTGTTGAGTATCCTCTTGCTGTTGTTGAGTATGTACCTACAATACCAACATGTACAGGAACTCATAGAAGCATCAAAGCATATATACCTAATCATCAAGCTATGTCTTTCAAGAACACTTCACAGGTGCAACATATTAAGGGTTTGCCACTCAATTGGAAAGGAAAATTGGACAAAGTTCATCAACTATACTCAAAGGATCCACTCTACAACAAGAGTACAAAGCAATTTGAGCTTGACTATAGGGATAAAGGAAGAACAGGACTTGTAATTCAGAAATCAGTTAAAAACTTTCAGCTCACTTTAGAGGAGAATGGGAAGCAGACAATTTTGCAGCTAGGGAGGGTGGCAAAATCTAAGTTTGTTATGGACTATAGATATCCTTTGACTGGTTACCAGGCTTTTTCGATATGTCTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAA 1119 0.4084 MKKNHQNQNLNLGGMFSNPLSEIQTNSTRRSCSNVTDNKENTNANVVPSLPKSKSFSTRIVKPSSLQFCMQINDSSHFSNSLKIWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPTPQGLSATTFFSLYTYEGQGRQNRKLAVACHNRRRNGRSQFTVAQNVKGLLSCSDETFLGTVTANLTGSKYNIWDQKHCPNSKSKSNQPNSKQPLAVVEYPLAVVEYVPTIPTCTGTHRSIKAYIPNHQAMSFKNTSQVQHIKGLPLNWKGKLDKVHQLYSKDPLYNKSTKQFELDYRDKGRTGLVIQKSVKNFQLTLEENGKQTILQLGRVAKSKFVMDYRYPLTGYQAFSICLASIDAKLCCIV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g7094 372 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Psa5g7094 372 PRINTS Tubby superfamily signature 308 324 IPR000007 -
Psa5g7094 372 PRINTS Tubby superfamily signature 328 347 IPR000007 -
Psa5g7094 372 PRINTS Tubby superfamily signature 349 371 IPR000007 -
Psa5g7094 372 Gene3D Tubby Protein; Chain A 99 371 IPR025659 -
Psa5g7094 372 PANTHER TUBBY-LIKE PROTEIN 8 31 370 - -
Psa5g7094 372 PANTHER TUBBY-RELATED 31 370 - -
Psa5g7094 372 SUPERFAMILY Tubby C-terminal domain-like 95 370 IPR025659 -
Psa5g7094 372 Pfam Tub family 109 365 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g7094 Psa-Chr5 579082179 579083715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g7094 54 265 TUB Transcription Factor Family AT1G16070 51.948 2.36e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa5g7094 Tub 1.1e-44 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g7094 K19600 - gmx:100803500 442.965